DNA Microarray Analysis: From Affymetrix CEL Files to Comparative Gene Expression

Sandeep Kumar; Shruti Shandilya; Suman Kapila; Mohit Sharma; Nikhil Agrawal

doi:10.1002/9781119654803.ch8

DNA Microarray Analysis: From Affymetrix CEL Files to Comparative Gene Expression

Sandeep Kumar, Shruti Shandilya, Suman Kapila, Mohit Sharma, Nikhil Agrawal

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Tutkimustuotos: Artikkeli kirjassa/konferenssijulkaisussa › Chapter › Scientific › vertaisarvioitu

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Microarray technique is widely used for the rapid detection and comparison of expression of thousands of genes at the same time. For the microarray data analysis, robust and reproducible protocols are being generated day by day. Bioconductor provides several free microarray data analysis packages. The analysis includes the following processes: quality control, normalization, and calculation of differential gene expression. This chapter demonstrates a protocol to find out the differentially expressed genes from the raw data (.CEL files) using the Bioconductor tools.

Alkuperäiskieli	Englanti
Otsikko	Computation in Bioinformatics
Alaotsikko	Multidisciplinary Applications
Kustantaja	Wiley
Sivut	139-153
Sivumäärä	15
ISBN (elektroninen)	9781119654803
ISBN (painettu)	9781119654711
DOI - pysyväislinkit	https://doi.org/10.1002/9781119654803.ch8
Tila	Julkaistu - 1 tammik. 2021
OKM-julkaisutyyppi	A3 Kirjan tai muun kokoomateoksen osa

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10.1002/9781119654803.ch8

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AU - Kumar, Sandeep

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AU - Sharma, Mohit

AU - Agrawal, Nikhil

PY - 2021/1/1

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DNA Microarray Analysis: From Affymetrix CEL Files to Comparative Gene Expression

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