Dielectric trapping of biopolymers translocating through insulating membranes

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Dielectric trapping of biopolymers translocating through insulating membranes. / Buyukdagli, Sahin; Sarabadani, Jalal; Ala-Nissila, Tapio.

julkaisussa: Polymers, Vuosikerta 10, Nro 11, 1242, 09.11.2018, s. 1-20.

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Bibtex - Lataa

@article{572ea1d7db8244c685b3ca94992a3144,
title = "Dielectric trapping of biopolymers translocating through insulating membranes",
abstract = "Sensitive sequencing of biopolymers by nanopore-based translocation techniques requires an extension of the time spent by the molecule in the pore. We develop an electrostatic theory of polymer translocation to show that the translocation time can be extended via the dielectric trapping of the polymer. In dilute salt conditions, the dielectric contrast between the low permittivity membrane and large permittivity solvent gives rise to attractive interactions between the cis and trans portions of the polymer. This self-attraction acts as a dielectric trap that can enhance the translocation time by orders of magnitude. We also find that electrostatic interactions result in the piecewise scaling of the translocation time t with the polymer length L. In the short polymer regime L ≲ 10 nm where the external drift force dominates electrostatic polymer interactions, the translocation is characterized by the drift behavior τ ~ L2. In the intermediate length regime 10 nm. ≲ L ≲ kb -1 where kb is the Debye-H{\"u}ckel screening parameter, the dielectric trap takes over the drift force. As a result, increasing polymer length leads to quasi-exponential growth of the translocation time. Finally, in the regime of long polymers L ≳ kb -1 where salt screening leads to the saturation of the dielectric trap, the translocation time grows linearly as τ ~ L. This strong departure from the drift behavior highlights the essential role played by electrostatic interactions in polymer translocation.",
keywords = "Charge screening, Dielectric membranes, Electrostatic interactions, Polymer translocation",
author = "Sahin Buyukdagli and Jalal Sarabadani and Tapio Ala-Nissila",
year = "2018",
month = "11",
day = "9",
doi = "10.3390/polym10111242",
language = "English",
volume = "10",
pages = "1--20",
journal = "Polymers",
issn = "2073-4360",
publisher = "MDPI AG",
number = "11",

}

RIS - Lataa

TY - JOUR

T1 - Dielectric trapping of biopolymers translocating through insulating membranes

AU - Buyukdagli, Sahin

AU - Sarabadani, Jalal

AU - Ala-Nissila, Tapio

PY - 2018/11/9

Y1 - 2018/11/9

N2 - Sensitive sequencing of biopolymers by nanopore-based translocation techniques requires an extension of the time spent by the molecule in the pore. We develop an electrostatic theory of polymer translocation to show that the translocation time can be extended via the dielectric trapping of the polymer. In dilute salt conditions, the dielectric contrast between the low permittivity membrane and large permittivity solvent gives rise to attractive interactions between the cis and trans portions of the polymer. This self-attraction acts as a dielectric trap that can enhance the translocation time by orders of magnitude. We also find that electrostatic interactions result in the piecewise scaling of the translocation time t with the polymer length L. In the short polymer regime L ≲ 10 nm where the external drift force dominates electrostatic polymer interactions, the translocation is characterized by the drift behavior τ ~ L2. In the intermediate length regime 10 nm. ≲ L ≲ kb -1 where kb is the Debye-Hückel screening parameter, the dielectric trap takes over the drift force. As a result, increasing polymer length leads to quasi-exponential growth of the translocation time. Finally, in the regime of long polymers L ≳ kb -1 where salt screening leads to the saturation of the dielectric trap, the translocation time grows linearly as τ ~ L. This strong departure from the drift behavior highlights the essential role played by electrostatic interactions in polymer translocation.

AB - Sensitive sequencing of biopolymers by nanopore-based translocation techniques requires an extension of the time spent by the molecule in the pore. We develop an electrostatic theory of polymer translocation to show that the translocation time can be extended via the dielectric trapping of the polymer. In dilute salt conditions, the dielectric contrast between the low permittivity membrane and large permittivity solvent gives rise to attractive interactions between the cis and trans portions of the polymer. This self-attraction acts as a dielectric trap that can enhance the translocation time by orders of magnitude. We also find that electrostatic interactions result in the piecewise scaling of the translocation time t with the polymer length L. In the short polymer regime L ≲ 10 nm where the external drift force dominates electrostatic polymer interactions, the translocation is characterized by the drift behavior τ ~ L2. In the intermediate length regime 10 nm. ≲ L ≲ kb -1 where kb is the Debye-Hückel screening parameter, the dielectric trap takes over the drift force. As a result, increasing polymer length leads to quasi-exponential growth of the translocation time. Finally, in the regime of long polymers L ≳ kb -1 where salt screening leads to the saturation of the dielectric trap, the translocation time grows linearly as τ ~ L. This strong departure from the drift behavior highlights the essential role played by electrostatic interactions in polymer translocation.

KW - Charge screening

KW - Dielectric membranes

KW - Electrostatic interactions

KW - Polymer translocation

UR - http://www.scopus.com/inward/record.url?scp=85056408114&partnerID=8YFLogxK

U2 - 10.3390/polym10111242

DO - 10.3390/polym10111242

M3 - Article

VL - 10

SP - 1

EP - 20

JO - Polymers

JF - Polymers

SN - 2073-4360

IS - 11

M1 - 1242

ER -

ID: 29800443