brainlife.io : a decentralized and open-source cloud platform to support neuroscience research

Soichi Hayashi; Bradley A. Caron; Anibal Sólon Heinsfeld; Sophia Vinci-Booher; Brent McPherson; Daniel N. Bullock; Giulia Bertò; Guiomar Niso; Sandra Hanekamp; Daniel Levitas; Kimberly Ray; Anne MacKenzie; Paolo Avesani; Lindsey Kitchell; Josiah K. Leong; Filipi Nascimento-Silva; Serge Koudoro; Hanna Willis; Jasleen K. Jolly; Derek Pisner; Taylor R. Zuidema; Jan W. Kurzawski; Kyriaki Mikellidou; Aurore Bussalb; Maximilien Chaumon; Nathalie George; Christopher Rorden; Conner Victory; Dheeraj Bhatia; Dogu Baran Aydogan; Fang Cheng F. Yeh; Franco Delogu; Javier Guaje; Jelle Veraart; Jeremy Fischer; Joshua Faskowitz; Ricardo Fabrega; David Hunt; Shawn McKee; Shawn T. Brown; Stephanie Heyman; Vittorio Iacovella; Amanda F. Mejia; Daniele Marinazzo; R. Cameron Craddock; Emanuale Olivetti; Jamie L. Hanson; Eleftherios Garyfallidis; Dan Stanzione; James Carson; Robert Henschel; David Y. Hancock; Craig A. Stewart; David Schnyer; Damian O. Eke; Russell A. Poldrack; Steffen Bollman; Ashley Stewart; Holly Bridge; Ilaria Sani; Winrich A. Freiwald; Aina Puce; Nicholas L. Port; Franco Pestilli

doi:10.1038/s41592-024-02237-2

brainlife.io : a decentralized and open-source cloud platform to support neuroscience research

Soichi Hayashi
, Bradley A. Caron
, Anibal Sólon Heinsfeld
, Sophia Vinci-Booher
, Brent McPherson
, Daniel N. Bullock
, Giulia Bertò
, Guiomar Niso
, Sandra Hanekamp
, Daniel Levitas
, Kimberly Ray
, Anne MacKenzie
, Paolo Avesani
, Lindsey Kitchell
, Josiah K. Leong
, Filipi Nascimento-Silva
, Serge Koudoro
, Hanna Willis
, Jasleen K. Jolly
, Derek Pisner

Taylor R. Zuidema, Jan W. Kurzawski, Kyriaki Mikellidou, Aurore Bussalb, Maximilien Chaumon, Nathalie George, Christopher Rorden, Conner Victory, Dheeraj Bhatia, Dogu Baran Aydogan, Fang Cheng F. Yeh, Franco Delogu, Javier Guaje, Jelle Veraart, Jeremy Fischer, Joshua Faskowitz, Ricardo Fabrega, David Hunt, Shawn McKee, Shawn T. Brown, Stephanie Heyman, Vittorio Iacovella, Amanda F. Mejia, Daniele Marinazzo, R. Cameron Craddock, Emanuale Olivetti, Jamie L. Hanson, Eleftherios Garyfallidis, Dan Stanzione, James Carson, Robert Henschel, David Y. Hancock, Craig A. Stewart, David Schnyer, Damian O. Eke, Russell A. Poldrack, Steffen Bollman, Ashley Stewart, Holly Bridge, Ilaria Sani, Winrich A. Freiwald, Aina Puce, Nicholas L. Port, Franco Pestilli^*

^*Tämän työn vastaava kirjoittaja

Neurotieteen ja lääketieteellisen tekniikan laitos

Indiana University (IU)
Austin-UTexas
Vanderbilt University
McGill University
Fondazione Bruno Kessler
Johns Hopkins Applied Physics Laboratory
University of Arkansas System
University of Oxford
Anglia Ruskin University
New York University
University of Cyprus
UMR7095
University of South Carolina
University of Eastern Finland
University of Pittsburgh
University of Michigan, Ann Arbor
BEC-INFM
Ghent University
The University of Nottingham
Stanford University
University of Queensland
Rockefeller University
University of Geneva
University of Limassol
Lawrence Technological University
Hewlett-Packard
Shegel

Tutkimustuotos: Lehtiartikkeli › Article › Scientific › vertaisarvioitu

37 Viittaukset (Web of Science)

20 Lataukset (Pure)

Abstrakti

Neuroscience is advancing standardization and tool development to support rigor and transparency. Consequently, data pipeline complexity has increased, hindering FAIR (findable, accessible, interoperable and reusable) access. brainlife.io was developed to democratize neuroimaging research. The platform provides data standardization, management, visualization and processing and automatically tracks the provenance history of thousands of data objects. Here, brainlife.io is described and evaluated for validity, reliability, reproducibility, replicability and scientific utility using four data modalities and 3,200 participants.

Alkuperäiskieli	Englanti
Sivut	809-813
Sivumäärä	5
Julkaisu	Nature Methods
Vuosikerta	21
Numero	5
Varhainen verkossa julkaisun päivämäärä	11 huhtik. 2024
DOI - pysyväislinkit	https://doi.org/10.1038/s41592-024-02237-2
Tila	Julkaistu - toukok. 2024
OKM-julkaisutyyppi	A1 Alkuperäisartikkeli tieteellisessä aikakauslehdessä

Pääsy asiakirjaan

10.1038/s41592-024-02237-2Lisenssi: CC BY

brainlife.io - a decentralized and open-source cloud platform to support neuroscience researchFinal published version, 9,96 MBLisenssi: CC BY

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Hayashi, S., Caron, B. A., Heinsfeld, A. S., Vinci-Booher, S., McPherson, B., Bullock, D. N., Bertò, G., Niso, G., Hanekamp, S., Levitas, D., Ray, K., MacKenzie, A., Avesani, P., Kitchell, L., Leong, J. K., Nascimento-Silva, F., Koudoro, S., Willis, H., Jolly, J. K., ... Pestilli, F. (2024). brainlife.io : a decentralized and open-source cloud platform to support neuroscience research. Nature Methods, 21(5), 809-813. https://doi.org/10.1038/s41592-024-02237-2

@article{5324a55e4ef64c09b51b381f64545148,

title = "brainlife.io : a decentralized and open-source cloud platform to support neuroscience research",

abstract = "Neuroscience is advancing standardization and tool development to support rigor and transparency. Consequently, data pipeline complexity has increased, hindering FAIR (findable, accessible, interoperable and reusable) access. brainlife.io was developed to democratize neuroimaging research. The platform provides data standardization, management, visualization and processing and automatically tracks the provenance history of thousands of data objects. Here, brainlife.io is described and evaluated for validity, reliability, reproducibility, replicability and scientific utility using four data modalities and 3,200 participants.",

author = "Soichi Hayashi and Caron, \{Bradley A.\} and Heinsfeld, \{Anibal S{\'o}lon\} and Sophia Vinci-Booher and Brent McPherson and Bullock, \{Daniel N.\} and Giulia Bert{\`o} and Guiomar Niso and Sandra Hanekamp and Daniel Levitas and Kimberly Ray and Anne MacKenzie and Paolo Avesani and Lindsey Kitchell and Leong, \{Josiah K.\} and Filipi Nascimento-Silva and Serge Koudoro and Hanna Willis and Jolly, \{Jasleen K.\} and Derek Pisner and Zuidema, \{Taylor R.\} and Kurzawski, \{Jan W.\} and Kyriaki Mikellidou and Aurore Bussalb and Maximilien Chaumon and Nathalie George and Christopher Rorden and Conner Victory and Dheeraj Bhatia and Aydogan, \{Dogu Baran\} and Yeh, \{Fang Cheng F.\} and Franco Delogu and Javier Guaje and Jelle Veraart and Jeremy Fischer and Joshua Faskowitz and Ricardo Fabrega and David Hunt and Shawn McKee and Brown, \{Shawn T.\} and Stephanie Heyman and Vittorio Iacovella and Mejia, \{Amanda F.\} and Daniele Marinazzo and Craddock, \{R. Cameron\} and Emanuale Olivetti and Hanson, \{Jamie L.\} and Eleftherios Garyfallidis and Dan Stanzione and James Carson and Robert Henschel and Hancock, \{David Y.\} and Stewart, \{Craig A.\} and David Schnyer and Eke, \{Damian O.\} and Poldrack, \{Russell A.\} and Steffen Bollman and Ashley Stewart and Holly Bridge and Ilaria Sani and Freiwald, \{Winrich A.\} and Aina Puce and Port, \{Nicholas L.\} and Franco Pestilli",

note = "Publisher Copyright: {\textcopyright} The Author(s) 2024.",

year = "2024",

month = may,

doi = "10.1038/s41592-024-02237-2",

language = "English",

volume = "21",

pages = "809--813",

journal = "Nature Methods",

issn = "1548-7091",

publisher = "Nature Publishing Group",

number = "5",

}

Hayashi, S, Caron, BA, Heinsfeld, AS, Vinci-Booher, S, McPherson, B, Bullock, DN, Bertò, G, Niso, G, Hanekamp, S, Levitas, D, Ray, K, MacKenzie, A, Avesani, P, Kitchell, L, Leong, JK, Nascimento-Silva, F, Koudoro, S, Willis, H, Jolly, JK, Pisner, D, Zuidema, TR, Kurzawski, JW, Mikellidou, K, Bussalb, A, Chaumon, M, George, N, Rorden, C, Victory, C, Bhatia, D, Aydogan, DB, Yeh, FCF, Delogu, F, Guaje, J, Veraart, J, Fischer, J, Faskowitz, J, Fabrega, R, Hunt, D, McKee, S, Brown, ST, Heyman, S, Iacovella, V, Mejia, AF, Marinazzo, D, Craddock, RC, Olivetti, E, Hanson, JL, Garyfallidis, E, Stanzione, D, Carson, J, Henschel, R, Hancock, DY, Stewart, CA, Schnyer, D, Eke, DO, Poldrack, RA, Bollman, S, Stewart, A, Bridge, H, Sani, I, Freiwald, WA, Puce, A, Port, NL & Pestilli, F 2024, 'brainlife.io : a decentralized and open-source cloud platform to support neuroscience research', Nature Methods, Vuosikerta 21, Nro 5, Sivut 809-813. https://doi.org/10.1038/s41592-024-02237-2

TY - JOUR

T1 - brainlife.io : a decentralized and open-source cloud platform to support neuroscience research

AU - Hayashi, Soichi

AU - Caron, Bradley A.

AU - Heinsfeld, Anibal Sólon

AU - Vinci-Booher, Sophia

AU - McPherson, Brent

AU - Bullock, Daniel N.

AU - Bertò, Giulia

AU - Niso, Guiomar

AU - Hanekamp, Sandra

AU - Levitas, Daniel

AU - Ray, Kimberly

AU - MacKenzie, Anne

AU - Avesani, Paolo

AU - Kitchell, Lindsey

AU - Leong, Josiah K.

AU - Nascimento-Silva, Filipi

AU - Koudoro, Serge

AU - Willis, Hanna

AU - Jolly, Jasleen K.

AU - Pisner, Derek

AU - Zuidema, Taylor R.

AU - Kurzawski, Jan W.

AU - Mikellidou, Kyriaki

AU - Bussalb, Aurore

AU - Chaumon, Maximilien

AU - George, Nathalie

AU - Rorden, Christopher

AU - Victory, Conner

AU - Bhatia, Dheeraj

AU - Aydogan, Dogu Baran

AU - Yeh, Fang Cheng F.

AU - Delogu, Franco

AU - Guaje, Javier

AU - Veraart, Jelle

AU - Fischer, Jeremy

AU - Faskowitz, Joshua

AU - Fabrega, Ricardo

AU - Hunt, David

AU - McKee, Shawn

AU - Brown, Shawn T.

AU - Heyman, Stephanie

AU - Iacovella, Vittorio

AU - Mejia, Amanda F.

AU - Marinazzo, Daniele

AU - Craddock, R. Cameron

AU - Olivetti, Emanuale

AU - Hanson, Jamie L.

AU - Garyfallidis, Eleftherios

AU - Stanzione, Dan

AU - Carson, James

AU - Henschel, Robert

AU - Hancock, David Y.

AU - Stewart, Craig A.

AU - Schnyer, David

AU - Eke, Damian O.

AU - Poldrack, Russell A.

AU - Bollman, Steffen

AU - Stewart, Ashley

AU - Bridge, Holly

AU - Sani, Ilaria

AU - Freiwald, Winrich A.

AU - Puce, Aina

AU - Port, Nicholas L.

AU - Pestilli, Franco

PY - 2024/5

Y1 - 2024/5

N2 - Neuroscience is advancing standardization and tool development to support rigor and transparency. Consequently, data pipeline complexity has increased, hindering FAIR (findable, accessible, interoperable and reusable) access. brainlife.io was developed to democratize neuroimaging research. The platform provides data standardization, management, visualization and processing and automatically tracks the provenance history of thousands of data objects. Here, brainlife.io is described and evaluated for validity, reliability, reproducibility, replicability and scientific utility using four data modalities and 3,200 participants.

AB - Neuroscience is advancing standardization and tool development to support rigor and transparency. Consequently, data pipeline complexity has increased, hindering FAIR (findable, accessible, interoperable and reusable) access. brainlife.io was developed to democratize neuroimaging research. The platform provides data standardization, management, visualization and processing and automatically tracks the provenance history of thousands of data objects. Here, brainlife.io is described and evaluated for validity, reliability, reproducibility, replicability and scientific utility using four data modalities and 3,200 participants.

UR - https://www.scopus.com/pages/publications/85189963438

U2 - 10.1038/s41592-024-02237-2

DO - 10.1038/s41592-024-02237-2

M3 - Article

AN - SCOPUS:85189963438

SN - 1548-7091

VL - 21

SP - 809

EP - 813

JO - Nature Methods

JF - Nature Methods

IS - 5

ER -

brainlife.io : a decentralized and open-source cloud platform to support neuroscience research

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