TY - JOUR
T1 - Auto-detection and segmentation of involved lymph nodes in HPV-associated oropharyngeal cancer using a convolutional deep learning neural network
AU - Taku, Nicolette
AU - Wahid, Kareem A.
AU - van Dijk, Lisanne V.
AU - Sahlsten, Jaakko
AU - Jaskari, Joel
AU - Kaski, Kimmo
AU - Fuller, Clifton D.
AU - Naser, Mohamed A.
N1 - Funding Information:
Nicolette Taku received funding from the National Institutes of Health Research Education Program (R25EB025787). Kareem A. Wahid is supported by the Dr. John J. Kopchick Fellowship through The University of Texas MD Anderson UTHealth Graduate School of Biomedical Sciences, the American Legion Auxiliary Fellowship in Cancer Research, and an NIH/National Institute for Dental and Craniofacial Research (NIDCR) F31 fellowship (1 F31DE031502-01). Clifton David Fuller received funding from the National Institute for Dental and Craniofacial Research Award [1R01DE025248-01/R56DE025248] and Academic-Industrial Partnership Award [R01 DE028290], the National Science Foundation (NSF), Division of Mathematical Sciences, Joint NIH/NSF Initiative on Quantitative Approaches to Biomedical Big Data (QuBBD) Grant [NSF 1557679], the NIH Big Data to Knowledge (BD2K) Program of the National Cancer Institute (NCI) Early Stage Development of Technologies in Biomedical Computing, Informatics, and Big Data Science Award [1R01CA214825], the NCI Early Phase Clinical Trials in Imaging and Image-Guided Interventions Program [1R01CA218148], the NIH/NCI Cancer Center Support Grant (CCSG) Pilot Research Program Award from the UT MD Anderson CCSG Radiation Oncology and Cancer Imaging Program [P30CA016672], the NIH/NCI Head and Neck Specialized Programs of Research Excellence (SPORE) Developmental Research Program Award [P50 CA097007] and the National Institute of Biomedical Imaging and Bioengineering (NIBIB) Research Education Program [R25EB025787]. He has also received direct industry grant support from Elekta. Mohamed Naser received funding from the National Institutes of Health (R01DE028290-01).
Publisher Copyright:
© 2022 The Author(s)
PY - 2022/9
Y1 - 2022/9
N2 - Purpose: Segmentation of involved lymph nodes on head and neck computed tomography (HN-CT) scans is necessary for the radiotherapy planning of early-stage human papilloma virus (HPV) associated oropharynx cancers (OPC). We aimed to train a deep learning convolutional neural network (DL-CNN) to segment involved lymph nodes on HN-CT scans. Methods: Ground-truth segmentation of involved nodes was performed on pre-surgical HN-CT scans for 90 patients who underwent levels II-IV neck dissection for node-positive HPV-OPC (training/validation [n = 70] and testing [n = 20]). A 5-fold cross validation approach was used to train 5 DL-CNN sub-models based on a residual U-net architecture. Validation and testing segmentation masks were compared to ground-truth masks using predetermined metrics. A lymph auto-detection model to discriminate between “node-positive” and “node-negative” HN-CT scans was developed by thresholding segmentation model outputs and evaluated using the area under the receiver operating characteristic curve (AUC). Results: In the DL-CNN validation phase, all sub-models yielded segmentation masks with median Dice ≥ 0.90 and median volume similarity score of ≥ 0.95. In the testing phase, the DL-CNN produced consensus segmentation masks with median Dice of 0.92 (IQR, 0.89–0.95), median volume similarity of 0.97 (IQR, 0.94–0.99), and median Hausdorff distance of 4.52 mm (IQR, 1.22–8.38). The detection model achieved an AUC of 0.98. Conclusion: The results from this single-institution study demonstrate the successful automation of lymph node segmentation for patients with HPV-OPC using a DL-CNN. Future studies, including validation with an external dataset, are necessary to clarify its role in the larger radiation oncology treatment planning workflow.
AB - Purpose: Segmentation of involved lymph nodes on head and neck computed tomography (HN-CT) scans is necessary for the radiotherapy planning of early-stage human papilloma virus (HPV) associated oropharynx cancers (OPC). We aimed to train a deep learning convolutional neural network (DL-CNN) to segment involved lymph nodes on HN-CT scans. Methods: Ground-truth segmentation of involved nodes was performed on pre-surgical HN-CT scans for 90 patients who underwent levels II-IV neck dissection for node-positive HPV-OPC (training/validation [n = 70] and testing [n = 20]). A 5-fold cross validation approach was used to train 5 DL-CNN sub-models based on a residual U-net architecture. Validation and testing segmentation masks were compared to ground-truth masks using predetermined metrics. A lymph auto-detection model to discriminate between “node-positive” and “node-negative” HN-CT scans was developed by thresholding segmentation model outputs and evaluated using the area under the receiver operating characteristic curve (AUC). Results: In the DL-CNN validation phase, all sub-models yielded segmentation masks with median Dice ≥ 0.90 and median volume similarity score of ≥ 0.95. In the testing phase, the DL-CNN produced consensus segmentation masks with median Dice of 0.92 (IQR, 0.89–0.95), median volume similarity of 0.97 (IQR, 0.94–0.99), and median Hausdorff distance of 4.52 mm (IQR, 1.22–8.38). The detection model achieved an AUC of 0.98. Conclusion: The results from this single-institution study demonstrate the successful automation of lymph node segmentation for patients with HPV-OPC using a DL-CNN. Future studies, including validation with an external dataset, are necessary to clarify its role in the larger radiation oncology treatment planning workflow.
UR - http://www.scopus.com/inward/record.url?scp=85132931752&partnerID=8YFLogxK
U2 - 10.1016/j.ctro.2022.06.007
DO - 10.1016/j.ctro.2022.06.007
M3 - Article
AN - SCOPUS:85132931752
SN - 2405-6308
VL - 36
SP - 47
EP - 55
JO - Clinical and Translational Radiation Oncology
JF - Clinical and Translational Radiation Oncology
ER -