Description
Fixes:Closes #265: Make r_0446 (formate-tetrahydrofolate ligase) irreversible, to prevent non-zero flux through TCA cycle (PR #290).
Features:Add pathways responsible for the formation of hydrogen sulfide as well as other volatile sulfur compounds during fermentation (PR #300).Closes #302: Simplify model curation with curateRxnsGenesMets function (PR #300).Remove COBRA Toolbox and MATLAB-git dependencies for the MATLAB-based curation pipeline (PR #303).Closes #308: Distribute yeast-GEM.mat in RAVEN's format, to include grRules and metComps fields (PR #301).
Refactor:Change format of yeast-GEM.txt file to include metabolite names and compartments, instead of metabolite identifiers, to simplify diff-ing (metabolite identifiers are already trackable in the yml-file) (PR #312).
The title and description of this software/code correspond with the situation when the software metadata was imported to ACRIS. The most recent version of metadata is available in the original repository.
Features:Add pathways responsible for the formation of hydrogen sulfide as well as other volatile sulfur compounds during fermentation (PR #300).Closes #302: Simplify model curation with curateRxnsGenesMets function (PR #300).Remove COBRA Toolbox and MATLAB-git dependencies for the MATLAB-based curation pipeline (PR #303).Closes #308: Distribute yeast-GEM.mat in RAVEN's format, to include grRules and metComps fields (PR #301).
Refactor:Change format of yeast-GEM.txt file to include metabolite names and compartments, instead of metabolite identifiers, to simplify diff-ing (metabolite identifiers are already trackable in the yml-file) (PR #312).
The title and description of this software/code correspond with the situation when the software metadata was imported to ACRIS. The most recent version of metadata is available in the original repository.
| Koska saatavilla | 18 toukok. 2022 |
|---|---|
| Julkaisija | Zenodo |
Dataset Licences
- CC0-1.0
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