Trait-like individual signatures dominate sleep EEG over insomnia-specific features

  • Markus Kyllönen
  • , Roy Cox
  • , Tommi Makkonen
  • , Risto Halonen
  • , Lauri Parkkonen
  • , Emil Hein
  • , Eus J.W. Van Someren
  • , Anu Katriina Pesonen*
  • *Corresponding author for this work

Research output: Contribution to journalArticleScientificpeer-review

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Abstract

Insomnia-specific features of sleep EEG activity have remained elusive, with existing findings being inconsistent and often weak in effect. Using machine learning, we analyzed two independent electroencephalogram (EEG) datasets spanning two nights (Nsubjects/nights=198/396), comprising individuals with insomnia disorder (ID) (mild to moderate/severe) and good sleeper controls (GSCs). The findings demonstrated that sleep EEG spectral features differentiated ID from GSC only when using identical participants for training and testing, indicating that model performance was driven by individual EEG signatures instead of ID-related patterns. Analyses with unsupervised learning, similarity matrices, and periodicity assessments further confirmed that brain activity during sleep is characterized by robust, individual-specific EEG signatures with trait-like stability over two nights. We also show that the individual sleep EEG signatures are driven by high frequency cortical activity, previously associated with cortical arousal during sleep. The results then demonstrate that high frequency cortical activity is not specific to ID, but the key to characterizing individual sleep EEG signatures. While ID may be characterized by EEG features beyond spectral power, our findings underscore the importance of a precision brain health framework that prioritizes deviations from an individual’s own neural baseline rather than relying solely on group-level comparisons.

Original languageEnglish
Article number4408
Pages (from-to)1-16
Number of pages16
JournalScientific Reports
Volume16
Issue number1
Early online date6 Jan 2026
DOIs
Publication statusE-pub ahead of print - 6 Jan 2026
MoE publication typeA1 Journal article-refereed

Funding

This work was supported by the Academy of Finland [grant number 1322035 and 1356020] and the Signe and Ane Gyllenberg Foundation to A-K.P; Business Finland [grant number 7981/31/2022] to L.P.; and the European Union (ERC-AdG OVERNIGHT, 101055383) to R.C. and EJWVS. Open access funded by the University of Helsinki Library. Views and opinions expressed are however those of the authors only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. The funder had no role in the design of the study; in the collection, analysis, or interpretation of data; in the writing of the manuscript, or in the decision to publish it. The funders had no role in studying design, data collection and analysis, decisions to publish, or preparation of the manuscript.

Keywords

  • EEG
  • Insomnia
  • Machine learning
  • Polysomnography
  • Sleep
  • Spectral analysis

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