Sensing Picomolar Concentrations of RNA Using Switchable Plasmonic Chirality

Timon Funck, Francesca Nicoli, Anton Kuzyk, Tim Liedl

Research output: Contribution to journalArticleScientificpeer-review

26 Citations (Scopus)

Abstract

Detecting small sequences of RNA in biological samples such as microRNA or viral RNA demands highly sensitive and specific methods. Here, a reconfigurable DNA origami template has been used where a chiral arrangement of gold nanorods on the structure can lead to the generation of strong circular dichroism (CD). Switching of the cross-like DNA structure is achieved by the addition of nucleic acid sequences that arrest the structure in one of the possible chiral states by specific molecular recognition. A specific sequence can thus be detected via the resulting changes of the plasmonic CD spectrum. We show the sensitive and selective detection of a target RNA sequence from the hepatitis C virus genome. In our design, the RNA binds to a complementary sequence that is part of the lock mechanism and thus leads to the formation of a defined state of the plasmonic system with a distinct optical response. With this approach, we were able to detect this specific RNA sequence at concentrations as low as 100 pM. We further show the stability of our system in human serum and thus pave the way towards the development of fast optical-based detectors for pathogenic RNA.
Original languageEnglish
Pages (from-to)13495-13498
JournalAngewandte Chemie
Volume57
Issue number41
DOIs
Publication statusPublished - 4 Oct 2018
MoE publication typeA1 Journal article-refereed

Keywords

  • sensing
  • DNA origami
  • plasmonics
  • chirality
  • RNA

Fingerprint Dive into the research topics of 'Sensing Picomolar Concentrations of RNA Using Switchable Plasmonic Chirality'. Together they form a unique fingerprint.

  • Projects

    DNA-based devices for detection and sensing of biomolecular interactions

    Ryssy, J., Natarajan, A. & Kuzyk, A.

    01/09/201731/08/2021

    Project: Academy of Finland: Other research funding

    Cite this