Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Ronald P. de Vries; Robert Riley; Ad Wiebenga; Guillermo Aguilar-Osorio; Sotiris Amillis; Christiane Akemi Uchima; Gregor Anderluh; Mojtaba Asadollahi; Marion Askin; Kerrie Barry; Evy Battaglia; Özgür Bayram; Tiziano Benocci; Susanna A. Braus-Stromeyer; Camila Caldana; David Cánovas; Gustavo C. Cerqueira; Fusheng Chen; Wanping Chen; Cindy Choi; Alicia Clum; Renato Augusto Corrêa dos Santos; André Ricardo de Lima Damásio; George Diallinas; Tamás Emri; Erzsébet Fekete; Michel Flipphi; Susanne Freyberg; Antonia Gallo; Christos Gournas; Rob Habgood; Matthieu Hainaut; María Laura Harispe; Bernard Henrissat; Sari Kristiina Hilden; Ryan Hope; Abeer Hossain; Eugenia Karabika; Levente Karaffa; Zsolt Karányi; Nada Kraševec; Alan Kuo; Harald Kusch; Kurt LaButti; Ellen L. Lagendijk; Alla Lapidus; Anthony Levasseur; Erika Lindquist; Anna Lipzen; Antonio F. Logrieco; Andrew MacCabe; Miia Riitta Mäkelä; Iran Malavazi; Petter Melin; Vera Meyer; Natalia Mielnichuk; Márton Miskei; Ákos P. Molnár; Giuseppina Mulé; Chew Yee Ngan; Margarita Orejas; Erzsébet Orosz; Jean Paul Ouedraogo; Karin M. Overkamp; Hee-Soo Park; Giancarlo Perrone; Francois Piumi; Peter J. Punt; Arthur F. J. Ram; Ana Ramón; Stefan Rauscher; Eric Record; Diego Mauricio Riaño-Pachón; Vincent Robert; Julian Röhrig; Roberto Ruller; Asaf Salamov; Nadhira S. Salih; Rob A. Samson; Erzsébet Sándor; Manuel Sanguinetti; Tabea Schütze; Kristina Sepčić; Ekaterina Shelest; Gavin Sherlock; Vicky Sophianopoulou; Fabio M. Squina; Hui Sun; Antonia Susca; Richard B. Todd; Adrian Tsang; Shiela E. Unkles; Nathalie van de Wiele; Diana van Rossen-Uffink; Juliana Velasco de Castro Oliveira; Tammi C. Vesth; Jaap Visser; Jae-Hyuk Yu; Miaomiao Zhou; Mikael R. Andersen; David B. Archer; Scott E. Baker; Isabelle Benoit; Axel A. Brakhage; Gerhard H. Braus; Reinhard Fischer; Jens C. Frisvad; Gustavo H. Goldman; Jos Houbraken; Berl Oakley; István Pócsi; Claudio Scazzocchio; Bernhard Seiboth; Patricia A. vanKuyk; Jennifer Wortman; Paul S. Dyer; Igor V. Grigoriev

doi:10.1186/s13059-017-1151-0

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

Ronald P. de Vries, Robert Riley, Ad Wiebenga, Guillermo Aguilar-Osorio, Sotiris Amillis, Christiane Akemi Uchima, Gregor Anderluh, Mojtaba Asadollahi, Marion Askin, Kerrie Barry, Evy Battaglia, Özgür Bayram, Tiziano Benocci, Susanna A. Braus-Stromeyer, Camila Caldana, David Cánovas, Gustavo C. Cerqueira, Fusheng Chen, Wanping Chen, Cindy ChoiAlicia Clum, Renato Augusto Corrêa dos Santos, André Ricardo de Lima Damásio, George Diallinas, Tamás Emri, Erzsébet Fekete, Michel Flipphi, Susanne Freyberg, Antonia Gallo, Christos Gournas, Rob Habgood, Matthieu Hainaut, María Laura Harispe, Bernard Henrissat, Sari Kristiina Hilden, Ryan Hope, Abeer Hossain, Eugenia Karabika, Levente Karaffa, Zsolt Karányi, Nada Kraševec, Alan Kuo, Harald Kusch, Kurt LaButti, Ellen L. Lagendijk, Alla Lapidus, Anthony Levasseur, Erika Lindquist, Anna Lipzen, Antonio F. Logrieco, Andrew MacCabe, Miia Riitta Mäkelä, Iran Malavazi, Petter Melin, Vera Meyer, Natalia Mielnichuk, Márton Miskei, Ákos P. Molnár, Giuseppina Mulé, Chew Yee Ngan, Margarita Orejas, Erzsébet Orosz, Jean Paul Ouedraogo, Karin M. Overkamp, Hee-Soo Park, Giancarlo Perrone, Francois Piumi, Peter J. Punt, Arthur F. J. Ram, Ana Ramón, Stefan Rauscher, Eric Record, Diego Mauricio Riaño-Pachón, Vincent Robert, Julian Röhrig, Roberto Ruller, Asaf Salamov, Nadhira S. Salih, Rob A. Samson, Erzsébet Sándor, Manuel Sanguinetti, Tabea Schütze, Kristina Sepčić, Ekaterina Shelest, Gavin Sherlock, Vicky Sophianopoulou, Fabio M. Squina, Hui Sun, Antonia Susca, Richard B. Todd, Adrian Tsang, Shiela E. Unkles, Nathalie van de Wiele, Diana van Rossen-Uffink, Juliana Velasco de Castro Oliveira, Tammi C. Vesth, Jaap Visser, Jae-Hyuk Yu, Miaomiao Zhou, Mikael R. Andersen, David B. Archer, Scott E. Baker, Isabelle Benoit, Axel A. Brakhage, Gerhard H. Braus, Reinhard Fischer, Jens C. Frisvad, Gustavo H. Goldman, Jos Houbraken, Berl Oakley, István Pócsi, Claudio Scazzocchio, Bernhard Seiboth, Patricia A. vanKuyk, Jennifer Wortman, Paul S. Dyer, Igor V. Grigoriev

Not published at Aalto University

University of Helsinki

Research output: Contribution to journal › Article › Scientific › peer-review

375 Citations (Scopus)

Original language	English
Journal	Genome Biology
Volume	18
Issue number	28
DOIs	https://doi.org/10.1186/s13059-017-1151-0
Publication status	Published - 2017
MoE publication type	A1 Journal article-refereed

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10.1186/s13059-017-1151-0Licence: CC BY

Cite this

de Vries, R. P., Riley, R., Wiebenga, A., Aguilar-Osorio, G., Amillis, S., Akemi Uchima, C., Anderluh, G., Asadollahi, M., Askin, M., Barry, K., Battaglia, E., Bayram, Ö., Benocci, T., Braus-Stromeyer, S. A., Caldana, C., Cánovas, D., Cerqueira, G. C., Chen, F., Chen, W., ... Grigoriev, I. V. (2017). Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome Biology, 18(28). https://doi.org/10.1186/s13059-017-1151-0

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title = "Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus",

author = "{de Vries}, {Ronald P.} and Robert Riley and Ad Wiebenga and Guillermo Aguilar-Osorio and Sotiris Amillis and {Akemi Uchima}, Christiane and Gregor Anderluh and Mojtaba Asadollahi and Marion Askin and Kerrie Barry and Evy Battaglia and {\"O}zg{\"u}r Bayram and Tiziano Benocci and Braus-Stromeyer, {Susanna A.} and Camila Caldana and David C{\'a}novas and Cerqueira, {Gustavo C.} and Fusheng Chen and Wanping Chen and Cindy Choi and Alicia Clum and {Corr{\^e}a dos Santos}, {Renato Augusto} and {de Lima Dam{\'a}sio}, {Andr{\'e} Ricardo} and George Diallinas and Tam{\'a}s Emri and Erzs{\'e}bet Fekete and Michel Flipphi and Susanne Freyberg and Antonia Gallo and Christos Gournas and Rob Habgood and Matthieu Hainaut and Harispe, {Mar{\'i}a Laura} and Bernard Henrissat and Hilden, {Sari Kristiina} and Ryan Hope and Abeer Hossain and Eugenia Karabika and Levente Karaffa and Zsolt Kar{\'a}nyi and Nada Kra{\v s}evec and Alan Kuo and Harald Kusch and Kurt LaButti and Lagendijk, {Ellen L.} and Alla Lapidus and Anthony Levasseur and Erika Lindquist and Anna Lipzen and Logrieco, {Antonio F.} and Andrew MacCabe and M{\"a}kel{\"a}, {Miia Riitta} and Iran Malavazi and Petter Melin and Vera Meyer and Natalia Mielnichuk and M{\'a}rton Miskei and Moln{\'a}r, {{\'A}kos P.} and Giuseppina Mul{\'e} and Ngan, {Chew Yee} and Margarita Orejas and Erzs{\'e}bet Orosz and Ouedraogo, {Jean Paul} and Overkamp, {Karin M.} and Hee-Soo Park and Giancarlo Perrone and Francois Piumi and Punt, {Peter J.} and Ram, {Arthur F. J.} and Ana Ram{\'o}n and Stefan Rauscher and Eric Record and Ria{\~n}o-Pach{\'o}n, {Diego Mauricio} and Vincent Robert and Julian R{\"o}hrig and Roberto Ruller and Asaf Salamov and Salih, {Nadhira S.} and Samson, {Rob A.} and Erzs{\'e}bet S{\'a}ndor and Manuel Sanguinetti and Tabea Sch{\"u}tze and Kristina Sep{\v c}i{\'c} and Ekaterina Shelest and Gavin Sherlock and Vicky Sophianopoulou and Squina, {Fabio M.} and Hui Sun and Antonia Susca and Todd, {Richard B.} and Adrian Tsang and Unkles, {Shiela E.} and {van de Wiele}, Nathalie and {van Rossen-Uffink}, Diana and {Velasco de Castro Oliveira}, Juliana and Vesth, {Tammi C.} and Jaap Visser and Jae-Hyuk Yu and Miaomiao Zhou and Andersen, {Mikael R.} and Archer, {David B.} and Baker, {Scott E.} and Isabelle Benoit and Brakhage, {Axel A.} and Braus, {Gerhard H.} and Reinhard Fischer and Frisvad, {Jens C.} and Goldman, {Gustavo H.} and Jos Houbraken and Berl Oakley and Istv{\'a}n P{\'o}csi and Claudio Scazzocchio and Bernhard Seiboth and vanKuyk, {Patricia A.} and Jennifer Wortman and Dyer, {Paul S.} and Grigoriev, {Igor V.}",

year = "2017",

doi = "10.1186/s13059-017-1151-0",

language = "English",

volume = "18",

journal = "Genome Biology",

issn = "1474-7596",

publisher = "BioMed Central",

number = "28",

}

de Vries, RP, Riley, R, Wiebenga, A, Aguilar-Osorio, G, Amillis, S, Akemi Uchima, C, Anderluh, G, Asadollahi, M, Askin, M, Barry, K, Battaglia, E, Bayram, Ö, Benocci, T, Braus-Stromeyer, SA, Caldana, C, Cánovas, D, Cerqueira, GC, Chen, F, Chen, W, Choi, C, Clum, A, Corrêa dos Santos, RA, de Lima Damásio, AR, Diallinas, G, Emri, T, Fekete, E, Flipphi, M, Freyberg, S, Gallo, A, Gournas, C, Habgood, R, Hainaut, M, Harispe, ML, Henrissat, B, Hilden, SK, Hope, R, Hossain, A, Karabika, E, Karaffa, L, Karányi, Z, Kraševec, N, Kuo, A, Kusch, H, LaButti, K, Lagendijk, EL, Lapidus, A, Levasseur, A, Lindquist, E, Lipzen, A, Logrieco, AF, MacCabe, A, Mäkelä, MR, Malavazi, I, Melin, P, Meyer, V, Mielnichuk, N, Miskei, M, Molnár, ÁP, Mulé, G, Ngan, CY, Orejas, M, Orosz, E, Ouedraogo, JP, Overkamp, KM, Park, H-S, Perrone, G, Piumi, F, Punt, PJ, Ram, AFJ, Ramón, A, Rauscher, S, Record, E, Riaño-Pachón, DM, Robert, V, Röhrig, J, Ruller, R, Salamov, A, Salih, NS, Samson, RA, Sándor, E, Sanguinetti, M, Schütze, T, Sepčić, K, Shelest, E, Sherlock, G, Sophianopoulou, V, Squina, FM, Sun, H, Susca, A, Todd, RB, Tsang, A, Unkles, SE, van de Wiele, N, van Rossen-Uffink, D, Velasco de Castro Oliveira, J, Vesth, TC, Visser, J, Yu, J-H, Zhou, M, Andersen, MR, Archer, DB, Baker, SE, Benoit, I, Brakhage, AA, Braus, GH, Fischer, R, Frisvad, JC, Goldman, GH, Houbraken, J, Oakley, B, Pócsi, I, Scazzocchio, C, Seiboth, B, vanKuyk, PA, Wortman, J, Dyer, PS & Grigoriev, IV 2017, 'Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus', Genome Biology, vol. 18, no. 28. https://doi.org/10.1186/s13059-017-1151-0

TY - JOUR

T1 - Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

AU - de Vries, Ronald P.

AU - Riley, Robert

AU - Wiebenga, Ad

AU - Aguilar-Osorio, Guillermo

AU - Amillis, Sotiris

AU - Akemi Uchima, Christiane

AU - Anderluh, Gregor

AU - Asadollahi, Mojtaba

AU - Askin, Marion

AU - Barry, Kerrie

AU - Battaglia, Evy

AU - Bayram, Özgür

AU - Benocci, Tiziano

AU - Braus-Stromeyer, Susanna A.

AU - Caldana, Camila

AU - Cánovas, David

AU - Cerqueira, Gustavo C.

AU - Chen, Fusheng

AU - Chen, Wanping

AU - Choi, Cindy

AU - Clum, Alicia

AU - Corrêa dos Santos, Renato Augusto

AU - de Lima Damásio, André Ricardo

AU - Diallinas, George

AU - Emri, Tamás

AU - Fekete, Erzsébet

AU - Flipphi, Michel

AU - Freyberg, Susanne

AU - Gallo, Antonia

AU - Gournas, Christos

AU - Habgood, Rob

AU - Hainaut, Matthieu

AU - Harispe, María Laura

AU - Henrissat, Bernard

AU - Hilden, Sari Kristiina

AU - Hope, Ryan

AU - Hossain, Abeer

AU - Karabika, Eugenia

AU - Karaffa, Levente

AU - Karányi, Zsolt

AU - Kraševec, Nada

AU - Kuo, Alan

AU - Kusch, Harald

AU - LaButti, Kurt

AU - Lagendijk, Ellen L.

AU - Lapidus, Alla

AU - Levasseur, Anthony

AU - Lindquist, Erika

AU - Lipzen, Anna

AU - Logrieco, Antonio F.

AU - MacCabe, Andrew

AU - Mäkelä, Miia Riitta

AU - Malavazi, Iran

AU - Melin, Petter

AU - Meyer, Vera

AU - Mielnichuk, Natalia

AU - Miskei, Márton

AU - Molnár, Ákos P.

AU - Mulé, Giuseppina

AU - Ngan, Chew Yee

AU - Orejas, Margarita

AU - Orosz, Erzsébet

AU - Ouedraogo, Jean Paul

AU - Overkamp, Karin M.

AU - Park, Hee-Soo

AU - Perrone, Giancarlo

AU - Piumi, Francois

AU - Punt, Peter J.

AU - Ram, Arthur F. J.

AU - Ramón, Ana

AU - Rauscher, Stefan

AU - Record, Eric

AU - Riaño-Pachón, Diego Mauricio

AU - Robert, Vincent

AU - Röhrig, Julian

AU - Ruller, Roberto

AU - Salamov, Asaf

AU - Salih, Nadhira S.

AU - Samson, Rob A.

AU - Sándor, Erzsébet

AU - Sanguinetti, Manuel

AU - Schütze, Tabea

AU - Sepčić, Kristina

AU - Shelest, Ekaterina

AU - Sherlock, Gavin

AU - Sophianopoulou, Vicky

AU - Squina, Fabio M.

AU - Sun, Hui

AU - Susca, Antonia

AU - Todd, Richard B.

AU - Tsang, Adrian

AU - Unkles, Shiela E.

AU - van de Wiele, Nathalie

AU - van Rossen-Uffink, Diana

AU - Velasco de Castro Oliveira, Juliana

AU - Vesth, Tammi C.

AU - Visser, Jaap

AU - Yu, Jae-Hyuk

AU - Zhou, Miaomiao

AU - Andersen, Mikael R.

AU - Archer, David B.

AU - Baker, Scott E.

AU - Benoit, Isabelle

AU - Brakhage, Axel A.

AU - Braus, Gerhard H.

AU - Fischer, Reinhard

AU - Frisvad, Jens C.

AU - Goldman, Gustavo H.

AU - Houbraken, Jos

AU - Oakley, Berl

AU - Pócsi, István

AU - Scazzocchio, Claudio

AU - Seiboth, Bernhard

AU - vanKuyk, Patricia A.

AU - Wortman, Jennifer

AU - Dyer, Paul S.

AU - Grigoriev, Igor V.

PY - 2017

Y1 - 2017

U2 - 10.1186/s13059-017-1151-0

DO - 10.1186/s13059-017-1151-0

M3 - Article

SN - 1474-7596

VL - 18

JO - Genome Biology

JF - Genome Biology

IS - 28

ER -