brainlife.io : a decentralized and open-source cloud platform to support neuroscience research

Soichi Hayashi; Bradley A. Caron; Anibal Sólon Heinsfeld; Sophia Vinci-Booher; Brent McPherson; Daniel N. Bullock; Giulia Bertò; Guiomar Niso; Sandra Hanekamp; Daniel Levitas; Kimberly Ray; Anne MacKenzie; Paolo Avesani; Lindsey Kitchell; Josiah K. Leong; Filipi Nascimento-Silva; Serge Koudoro; Hanna Willis; Jasleen K. Jolly; Derek Pisner; Taylor R. Zuidema; Jan W. Kurzawski; Kyriaki Mikellidou; Aurore Bussalb; Maximilien Chaumon; Nathalie George; Christopher Rorden; Conner Victory; Dheeraj Bhatia; Dogu Baran Aydogan; Fang Cheng F. Yeh; Franco Delogu; Javier Guaje; Jelle Veraart; Jeremy Fischer; Joshua Faskowitz; Ricardo Fabrega; David Hunt; Shawn McKee; Shawn T. Brown; Stephanie Heyman; Vittorio Iacovella; Amanda F. Mejia; Daniele Marinazzo; R. Cameron Craddock; Emanuale Olivetti; Jamie L. Hanson; Eleftherios Garyfallidis; Dan Stanzione; James Carson; Robert Henschel; David Y. Hancock; Craig A. Stewart; David Schnyer; Damian O. Eke; Russell A. Poldrack; Steffen Bollman; Ashley Stewart; Holly Bridge; Ilaria Sani; Winrich A. Freiwald; Aina Puce; Nicholas L. Port; Franco Pestilli

doi:10.1038/s41592-024-02237-2

brainlife.io : a decentralized and open-source cloud platform to support neuroscience research

Soichi Hayashi, Bradley A. Caron, Anibal Sólon Heinsfeld, Sophia Vinci-Booher, Brent McPherson, Daniel N. Bullock, Giulia Bertò, Guiomar Niso, Sandra Hanekamp, Daniel Levitas, Kimberly Ray, Anne MacKenzie, Paolo Avesani, Lindsey Kitchell, Josiah K. Leong, Filipi Nascimento-Silva, Serge Koudoro, Hanna Willis, Jasleen K. Jolly, Derek PisnerTaylor R. Zuidema, Jan W. Kurzawski, Kyriaki Mikellidou, Aurore Bussalb, Maximilien Chaumon, Nathalie George, Christopher Rorden, Conner Victory, Dheeraj Bhatia, Dogu Baran Aydogan, Fang Cheng F. Yeh, Franco Delogu, Javier Guaje, Jelle Veraart, Jeremy Fischer, Joshua Faskowitz, Ricardo Fabrega, David Hunt, Shawn McKee, Shawn T. Brown, Stephanie Heyman, Vittorio Iacovella, Amanda F. Mejia, Daniele Marinazzo, R. Cameron Craddock, Emanuale Olivetti, Jamie L. Hanson, Eleftherios Garyfallidis, Dan Stanzione, James Carson, Robert Henschel, David Y. Hancock, Craig A. Stewart, David Schnyer, Damian O. Eke, Russell A. Poldrack, Steffen Bollman, Ashley Stewart, Holly Bridge, Ilaria Sani, Winrich A. Freiwald, Aina Puce, Nicholas L. Port, Franco Pestilli^*

^*Corresponding author for this work

Department of Neuroscience and Biomedical Engineering

Research output: Contribution to journal › Article › Scientific › peer-review

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Abstract

Neuroscience is advancing standardization and tool development to support rigor and transparency. Consequently, data pipeline complexity has increased, hindering FAIR (findable, accessible, interoperable and reusable) access. brainlife.io was developed to democratize neuroimaging research. The platform provides data standardization, management, visualization and processing and automatically tracks the provenance history of thousands of data objects. Here, brainlife.io is described and evaluated for validity, reliability, reproducibility, replicability and scientific utility using four data modalities and 3,200 participants.

Original language	English
Pages (from-to)	809-813
Number of pages	5
Journal	Nature Methods
Volume	21
Issue number	5
Early online date	11 Apr 2024
DOIs	https://doi.org/10.1038/s41592-024-02237-2
Publication status	Published - May 2024
MoE publication type	A1 Journal article-refereed

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brainlife.io - a decentralized and open-source cloud platform to support neuroscience researchFinal published version, 9.96 MBLicence: CC BY

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Hayashi, S., Caron, B. A., Heinsfeld, A. S., Vinci-Booher, S., McPherson, B., Bullock, D. N., Bertò, G., Niso, G., Hanekamp, S., Levitas, D., Ray, K., MacKenzie, A., Avesani, P., Kitchell, L., Leong, J. K., Nascimento-Silva, F., Koudoro, S., Willis, H., Jolly, J. K., ... Pestilli, F. (2024). brainlife.io : a decentralized and open-source cloud platform to support neuroscience research. Nature Methods, 21(5), 809-813. https://doi.org/10.1038/s41592-024-02237-2

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abstract = "Neuroscience is advancing standardization and tool development to support rigor and transparency. Consequently, data pipeline complexity has increased, hindering FAIR (findable, accessible, interoperable and reusable) access. brainlife.io was developed to democratize neuroimaging research. The platform provides data standardization, management, visualization and processing and automatically tracks the provenance history of thousands of data objects. Here, brainlife.io is described and evaluated for validity, reliability, reproducibility, replicability and scientific utility using four data modalities and 3,200 participants.",

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doi = "10.1038/s41592-024-02237-2",

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Hayashi, S, Caron, BA, Heinsfeld, AS, Vinci-Booher, S, McPherson, B, Bullock, DN, Bertò, G, Niso, G, Hanekamp, S, Levitas, D, Ray, K, MacKenzie, A, Avesani, P, Kitchell, L, Leong, JK, Nascimento-Silva, F, Koudoro, S, Willis, H, Jolly, JK, Pisner, D, Zuidema, TR, Kurzawski, JW, Mikellidou, K, Bussalb, A, Chaumon, M, George, N, Rorden, C, Victory, C, Bhatia, D, Aydogan, DB, Yeh, FCF, Delogu, F, Guaje, J, Veraart, J, Fischer, J, Faskowitz, J, Fabrega, R, Hunt, D, McKee, S, Brown, ST, Heyman, S, Iacovella, V, Mejia, AF, Marinazzo, D, Craddock, RC, Olivetti, E, Hanson, JL, Garyfallidis, E, Stanzione, D, Carson, J, Henschel, R, Hancock, DY, Stewart, CA, Schnyer, D, Eke, DO, Poldrack, RA, Bollman, S, Stewart, A, Bridge, H, Sani, I, Freiwald, WA, Puce, A, Port, NL & Pestilli, F 2024, 'brainlife.io : a decentralized and open-source cloud platform to support neuroscience research', Nature Methods, vol. 21, no. 5, pp. 809-813. https://doi.org/10.1038/s41592-024-02237-2

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AU - Vinci-Booher, Sophia

AU - McPherson, Brent

AU - Bullock, Daniel N.

AU - Bertò, Giulia

AU - Niso, Guiomar

AU - Hanekamp, Sandra

AU - Levitas, Daniel

AU - Ray, Kimberly

AU - MacKenzie, Anne

AU - Avesani, Paolo

AU - Kitchell, Lindsey

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AU - Jolly, Jasleen K.

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AU - George, Nathalie

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AU - Victory, Conner

AU - Bhatia, Dheeraj

AU - Aydogan, Dogu Baran

AU - Yeh, Fang Cheng F.

AU - Delogu, Franco

AU - Guaje, Javier

AU - Veraart, Jelle

AU - Fischer, Jeremy

AU - Faskowitz, Joshua

AU - Fabrega, Ricardo

AU - Hunt, David

AU - McKee, Shawn

AU - Brown, Shawn T.

AU - Heyman, Stephanie

AU - Iacovella, Vittorio

AU - Mejia, Amanda F.

AU - Marinazzo, Daniele

AU - Craddock, R. Cameron

AU - Olivetti, Emanuale

AU - Hanson, Jamie L.

AU - Garyfallidis, Eleftherios

AU - Stanzione, Dan

AU - Carson, James

AU - Henschel, Robert

AU - Hancock, David Y.

AU - Stewart, Craig A.

AU - Schnyer, David

AU - Eke, Damian O.

AU - Poldrack, Russell A.

AU - Bollman, Steffen

AU - Stewart, Ashley

AU - Bridge, Holly

AU - Sani, Ilaria

AU - Freiwald, Winrich A.

AU - Puce, Aina

AU - Port, Nicholas L.

AU - Pestilli, Franco

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U2 - 10.1038/s41592-024-02237-2

DO - 10.1038/s41592-024-02237-2

M3 - Article

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VL - 21

SP - 809

EP - 813

JO - Nature Methods

JF - Nature Methods

IS - 5

ER -

brainlife.io : a decentralized and open-source cloud platform to support neuroscience research

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