Atom’s Dynamics and Crystal Structure: An Ordinal Pattern Method

Rafał Abram, Roman Nowak, Dariusz Chrobak*

*Corresponding author for this work

Research output: Contribution to journalArticleScientificpeer-review

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Abstract

The ubiquitous nature of thermal fluctuations poses a limitation on the identification of crystal structures. However, the trajectory of an atom carries a fingerprint of its surroundings. This rationalizes the search for a method that can determine the local atomic configuration via the analysis of the movement of an individual atom. Here, we report, while using molecular modeling, how a statistical analysis of a single-atom speed trajectory, represented by ordinal patterns, distinguishes between actual crystal structures. Using the Shannon entropy of ordinal patterns enabled discernment of the studied high-pressure silicon phases. Identification of the atoms occupying the 2(c) and 6(f) Wyckoff positions of the r8 crystal revealed an increase in the developed method’s accuracy with trajectory length. The proposed concept of studying the structure of crystals offers new opportunities in solid-solid phase transformation studies.

Original languageEnglish
Pages (from-to)1136–1142
JournalJournal of Physical Chemistry A
Volume129
Issue number4
Early online date17 Jan 2025
DOIs
Publication statusPublished - 30 Jan 2025
MoE publication typeA1 Journal article-refereed

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