Algorithmic Designs for Biomolecular Nanostructures (ALBION)

Research Output

  • 6 Article
  • 2 Conference contribution
  • 1 Review Article
  • 1 Doctoral Thesis
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Article
2019

A computational framework for DNA sequencing microscopy

Hoffecker, I. T., Yang, Y., Bernardinelli, G., Orponen, P. & Högberg, B., 4 Sep 2019, In : Proceedings of the National Academy of Sciences. 116, 39, p. 19282-19287 6 p., 1821178116.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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25 Downloads (Pure)

A Critical Comparison of Rejection-Based Algorithms for Simulation of Large Biochemical Reaction Networks

Thanh, V. H., 1 Aug 2019, In : Bulletin of Mathematical Biology. 81, 8, p. 3053-3073 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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4 Citations (Scopus)
99 Downloads (Pure)
2018

Design methods for 3D wireframe DNA nanostructures

Orponen, P., Mar 2018, In : Natural Computing. 17, 1, p. 147-160

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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6 Citations (Scopus)
115 Downloads (Pure)

Effects of design choices on the stiffness of wireframe DNA origami structures

Benson, E., Mohammed, A., Rayneau-Kirkhope, D., Gådin, A., Orponen, P. & Högberg, B., 25 Sep 2018, In : ACS Nano. 12, 9, p. 9291-9299 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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10 Citations (Scopus)
145 Downloads (Pure)

Efficient anticorrelated variance reduction for stochastic simulation of biochemical reactions

Vo, T., Sep 2018, In : IET SYSTEMS BIOLOGY.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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140 Downloads (Pure)

Efficient finite-difference method for computing sensitivities of biochemical reactions

Thanh, V. H., Zunino, R. & Priami, C., 1 Oct 2018, In : Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 474, 2218, p. 1-20

Research output: Contribution to journalArticleScientificpeer-review

File
1 Citation (Scopus)
10 Downloads (Pure)