Algorithmic Designs for Biomolecular Nanostructures (ALBION) - Algoritmisia menetelmiä biomolekulaaristen nanorakenteiden suunnitteluun (ALBION)

Project: Academy of Finland: Other research funding

Research outputs

  1. 2019
  2. Published

    A computational framework for DNA sequencing microscopy

    Hoffecker, I. T., Yang, Y., Bernardinelli, G., Orponen, P. & Högberg, B., 4 Sep 2019, In : Proceedings of the National Academy of Sciences. 6 p., 1821178116.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2018
  4. Published

    Efficient finite-difference method for computing sensitivities of biochemical reactions

    Thanh, V. H., Zunino, R. & Priami, C., 1 Oct 2018, In : Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 474, 2218, p. 1-20

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Effects of design choices on the stiffness of wireframe DNA origami structures

    Benson, E., Mohammed, A., Rayneau-Kirkhope, D., Gådin, A., Orponen, P. & Högberg, B., 25 Sep 2018, In : ACS Nano. 12, 9, p. 9291-9299 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Efficient anticorrelated variance reduction for stochastic simulation of biochemical reactions

    Vo, T., Sep 2018, In : IET SYSTEMS BIOLOGY.

    Research output: Contribution to journalArticleScientificpeer-review

  7. E-pub ahead of print

    A Critical Comparison of Rejection-Based Algorithms for Simulation of Large Biochemical Reaction Networks

    Thanh, V. H., 6 Jul 2018, In : Bulletin of Mathematical Biology. p. 1-21 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Algorithmic design of cotranscriptionally folding 2D RNA origami structures

    Mohammed, A., Orponen, P. & Pai, S., 31 May 2018, Unconventional Computation and Natural Computation: 17th International Conference, UCNC 2018, Fontainebleau, France, June 25-29, 2018, Proceedings. Stepney, S. & Verlan, S. (eds.). p. 159-172 (Lecture Notes in Computer Science; vol. 10867).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  9. Published

    Design methods for 3D wireframe DNA nanostructures

    Orponen, P., Mar 2018, In : Natural Computing. 17, 1, p. 147-160

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Algorithmic Design of Biomolecular Nanostructures

    Mohammed, A., 2018, Aalto University. 168 p.

    Research output: ThesisDoctoral ThesisCollection of Articles

ID: 13998294