Algorithmic Designs for Biomolecular Nanostructures (ALBION)

Mohammed, Abdulmelik (Project Member)
Orponen, Pekka (Principal investigator)
Saman Booy, Mehdi (Project Member)
Vo, Thanh (Project Member)
Lohikko, Anna (Project Member)
Elonen, Antti (Project Member)
Korpela, Dani (Project Member)
Granö, Henrik (Project Member)
Gautam, Vinay (Project Member)

Department of Computer Science

Project Details

Short title	ALBION/Orponen
Acronym	ALBION
Status	Active
Effective start/end date	01/09/2017 → 31/08/2021

7 Article
2 Conference contribution
1 Review Article
1 Doctoral Thesis

A comparison of deterministic and stochastic approaches for sensitivity analysis in computational systems biology
Simoni, G., Vo, H. T., Priami, C. & Marchetti, L., 23 Mar 2020, In : BRIEFINGS IN BIOINFORMATICS. 21, 2, p. 527-540 14 p.
Research output: Contribution to journal › Review Article › Scientific › peer-review

Open Access
File
1 Citation (Scopus)

53 Downloads (Pure)
RSSALib: a library for stochastic simulation of complex biochemical reactions
Vo, T., 15 Sep 2020, In : Bioinformatics. 36, 18, p. 4825-4826 2 p.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File
17 Downloads (Pure)
RuleDSD: A rule-based modelling and simulation tool for DNA strand displacement systems
Gautam, V., Long, S. & Orponen, P., 2020, Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies: Volume 3 BIOINFORMATICS. De Maria, E., Fred, A. & Gamboa, H. (eds.). p. 158-167 10 p.
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

Open Access
File
67 Downloads (Pure)

2 Visit abroad
1 Hosting a visitor
1 Conference presentation

Ibuki Kawamata
Pekka Orponen (Host)
19 Feb 2018 → 23 Feb 2018
Activity: Hosting a visitor types › Hosting a visitor
Algorithmic design of 3D wireframe RNA polyhedra
Abdulmelik Mohammed (Speaker)
8 Oct 2018 → 12 Oct 2018
Activity: Talk or presentation types › Conference presentation
University of South Florida
Abdulmelik Mohammed (Visiting researcher)
29 Sep 2017 → 6 Oct 2017
Activity: Visiting an external institution types › Visit abroad