Algorithmic Designs for Biomolecular Nanostructures (ALBION)

Project Details

Short titleALBION/Orponen
Effective start/end date01/09/201731/08/2021

Research Output

  • 6 Article
  • 2 Conference contribution
  • 1 Doctoral Thesis

RuleDSD: A rule-based modelling and simulation tool for DNA strand displacement systems

Gautam, V., Long, S. & Orponen, P., 2020, Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies: Volume 3 BIOINFORMATICS. De Maria, E., Fred, A. & Gamboa, H. (eds.). p. 158-167 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
  • 6 Downloads (Pure)

    A computational framework for DNA sequencing microscopy

    Hoffecker, I. T., Yang, Y., Bernardinelli, G., Orponen, P. & Högberg, B., 4 Sep 2019, In : Proceedings of the National Academy of Sciences. 116, 39, p. 19282-19287 6 p., 1821178116.

    Research output: Contribution to journalArticleScientificpeer-review

    Open Access
  • 19 Downloads (Pure)

    A Critical Comparison of Rejection-Based Algorithms for Simulation of Large Biochemical Reaction Networks

    Thanh, V. H., 1 Aug 2019, In : Bulletin of Mathematical Biology. 81, 8, p. 3053-3073 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

    Open Access
  • 4 Citations (Scopus)
    89 Downloads (Pure)


    • 2 Visit abroad
    • 1 Hosting a visitor
    • 1 Conference presentation

    Ibuki Kawamata

    Pekka Orponen (Host)
    19 Feb 201823 Feb 2018

    Activity: Hosting a visitor typesHosting a visitor

    Algorithmic design of 3D wireframe RNA polyhedra

    Abdulmelik Mohammed (Speaker)
    8 Oct 201812 Oct 2018

    Activity: Talk or presentation typesConference presentation

    University of South Florida

    Abdulmelik Mohammed (Visiting researcher)
    29 Sep 20176 Oct 2017

    Activity: Visiting an external institution typesVisit abroad