Thanh Vo

  • Aalto SCI Computer Science Konemiehentie 2

20102020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

Filter
Article
2019

A Critical Comparison of Rejection-Based Algorithms for Simulation of Large Biochemical Reaction Networks

Thanh, V. H., 1 Aug 2019, In : Bulletin of Mathematical Biology. 81, 8, p. 3053-3073 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
4 Citations (Scopus)
99 Downloads (Pure)
2018

Efficient anticorrelated variance reduction for stochastic simulation of biochemical reactions

Vo, T., Sep 2018, In : IET SYSTEMS BIOLOGY.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
140 Downloads (Pure)

Efficient finite-difference method for computing sensitivities of biochemical reactions

Thanh, V. H., Zunino, R. & Priami, C., 1 Oct 2018, In : Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 474, 2218, p. 1-20

Research output: Contribution to journalArticleScientificpeer-review

File
1 Citation (Scopus)
10 Downloads (Pure)

Incorporating extrinsic noise into the stochastic simulation of biochemical reactions: A comparison of approaches

Thanh, V. H., Marchetti, L., Reali, F. & Priami, C., 2018, In : Journal of Chemical Physics. 148, 6

Research output: Contribution to journalArticleScientificpeer-review

2017

Efficient constant-time complexity algorithm for stochastic simulation of large reaction networks

Thanh, V. H., Zunino, R. & Priami, C., 2017, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 14, 3, p. 657-667 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Efficient stochastic simulation of biochemical reactions with noise and delays

Thanh, V. H., Zunino, R. & Priami, C., 2017, In : Journal of Chemical Physics. 146, 8

Research output: Contribution to journalArticleScientificpeer-review

Stochastic simulation of biochemical reactions with partial-propensity and rejection-based approaches

Thanh, V. H., 2017, In : MATHEMATICAL BIOSCIENCES. 292, p. 67-75 9 p.

Research output: Contribution to journalArticleScientificpeer-review

2016

Accelerating rejection-based simulation of biochemical reactions with bounded acceptance probability

Thanh, V. H., Priami, C. & Zunino, R., 2016, In : Journal of Chemical Physics. 144, 22, 224108.

Research output: Contribution to journalArticleScientificpeer-review

8 Citations (Scopus)

HRSSA - Efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks

Marchetti, L., Priami, C. & Thanh, V. H., 2016, In : Journal of Computational Physics. 317, p. 301-317 17 p.

Research output: Contribution to journalArticleScientificpeer-review

20 Citations (Scopus)
2015

On the rejection-based algorithm for simulation and analysis of large-scale reaction networks

Thanh, V. H., Zunino, R. & Priami, C., 2015, In : Journal of Chemical Physics. 142, 24

Research output: Contribution to journalArticleScientificpeer-review

Simulation of biochemical reactions with time-dependent rates by the rejection-based algorithm

Thanh, V. H. & Priami, C., 2015, In : Journal of Chemical Physics. 143, 5

Research output: Contribution to journalArticleScientificpeer-review

2014

Adaptive tree-based search for Stochastic simulation algorithm

Thanh, V. H. & Zunino, R., 2014, In : International Journal of Computational Biology and Drug Design. 7, 4, p. 341-357 17 p.

Research output: Contribution to journalArticleScientificpeer-review

17 Citations (Scopus)

Efficient rejection-based simulation of biochemical reactions with stochastic noise and delays

Thanh, V. H., Priami, C. & Zunino, R., 2014, In : Journal of Chemical Physics. 141, 13

Research output: Contribution to journalArticleScientificpeer-review