Thanh Vo

  • Aalto SCI Computer Science Konemiehentie 2

20102020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

2020

A comparison of deterministic and stochastic approaches for sensitivity analysis in computational systems biology

Simoni, G., Vo, H. T., Priami, C. & Marchetti, L., 23 Mar 2020, In : BRIEFINGS IN BIOINFORMATICS. 21, 2, p. 527-540 14 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
File
1 Citation (Scopus)
6 Downloads (Pure)
2019

A Critical Comparison of Rejection-Based Algorithms for Simulation of Large Biochemical Reaction Networks

Thanh, V. H., 1 Aug 2019, In : Bulletin of Mathematical Biology. 81, 8, p. 3053-3073 21 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
4 Citations (Scopus)
99 Downloads (Pure)
2018

Efficient anticorrelated variance reduction for stochastic simulation of biochemical reactions

Vo, T., Sep 2018, In : IET SYSTEMS BIOLOGY.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
140 Downloads (Pure)

Efficient finite-difference method for computing sensitivities of biochemical reactions

Thanh, V. H., Zunino, R. & Priami, C., 1 Oct 2018, In : Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences. 474, 2218, p. 1-20

Research output: Contribution to journalArticleScientificpeer-review

File
1 Citation (Scopus)
10 Downloads (Pure)

Incorporating extrinsic noise into the stochastic simulation of biochemical reactions: A comparison of approaches

Thanh, V. H., Marchetti, L., Reali, F. & Priami, C., 2018, In : Journal of Chemical Physics. 148, 6

Research output: Contribution to journalArticleScientificpeer-review

2017

Efficient constant-time complexity algorithm for stochastic simulation of large reaction networks

Thanh, V. H., Zunino, R. & Priami, C., 2017, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 14, 3, p. 657-667 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Efficient stochastic simulation of biochemical reactions with noise and delays

Thanh, V. H., Zunino, R. & Priami, C., 2017, In : Journal of Chemical Physics. 146, 8

Research output: Contribution to journalArticleScientificpeer-review

Simulation Algorithms for Computational Systems Biology

Marchetti, L., Priami, C. & Vo, T., Nov 2017, 245 p. (Texts in Theoretical Computer Science. An EATCS Series)

Research output: Book/ReportBookScientificpeer-review

Stochastic simulation of biochemical reactions with partial-propensity and rejection-based approaches

Thanh, V. H., 2017, In : MATHEMATICAL BIOSCIENCES. 292, p. 67-75 9 p.

Research output: Contribution to journalArticleScientificpeer-review

2016

Accelerating rejection-based simulation of biochemical reactions with bounded acceptance probability

Thanh, V. H., Priami, C. & Zunino, R., 2016, In : Journal of Chemical Physics. 144, 22, 224108.

Research output: Contribution to journalArticleScientificpeer-review

8 Citations (Scopus)

HRSSA - Efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks

Marchetti, L., Priami, C. & Thanh, V. H., 2016, In : Journal of Computational Physics. 317, p. 301-317 17 p.

Research output: Contribution to journalArticleScientificpeer-review

20 Citations (Scopus)
2015

On the rejection-based algorithm for simulation and analysis of large-scale reaction networks

Thanh, V. H., Zunino, R. & Priami, C., 2015, In : Journal of Chemical Physics. 142, 24

Research output: Contribution to journalArticleScientificpeer-review

Simulation of biochemical reactions with time-dependent rates by the rejection-based algorithm

Thanh, V. H. & Priami, C., 2015, In : Journal of Chemical Physics. 143, 5

Research output: Contribution to journalArticleScientificpeer-review

2014

Adaptive tree-based search for Stochastic simulation algorithm

Thanh, V. H. & Zunino, R., 2014, In : International Journal of Computational Biology and Drug Design. 7, 4, p. 341-357 17 p.

Research output: Contribution to journalArticleScientificpeer-review

17 Citations (Scopus)

Efficient rejection-based simulation of biochemical reactions with stochastic noise and delays

Thanh, V. H., Priami, C. & Zunino, R., 2014, In : Journal of Chemical Physics. 141, 13

Research output: Contribution to journalArticleScientificpeer-review

2013

Splitting for rare event simulation in biochemical systems

Thanh, V. H. & Zunino, R., 2013, SIMUTools 2013 - 6th International Conference on Simulation Tools and Techniques. ICST, p. 109-118

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2010

Simulation of mixed traffic flow within intersection

Thanh, V. H. & Van Hoai, T., 2010, Proceedings - 2nd International Conference on Knowledge and Systems Engineering, KSE 2010. p. 131-137

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review