If you made any changes in Pure these will be visible here soon.

Research Output

2020

High-dimensional structure learning of binary pairwise Markov networks: A comparative numerical study

Pensar, J., Xu, Y., Puranen, S., Pesonen, M., Kabashima, Y. & Corander, J., 1 Jan 2020, In : Computational Statistics and Data Analysis. 141, p. 62-76 15 p.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium

Arredondo-Alonso, S., Top, J., McNally, A., Puranen, S., Pesonen, M., Pensar, J., Marttinen, P., Braat, J., Rogers, M., van Schaik, W., Kaski, S., Willems, R. J. L., Corander, J. & Schürch, A., 2020, In : MBIO. 11, 1, e03284-19.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
29 Downloads (Pure)
2019

Emergence of ceftazidime-avibactam-resistant Klebsiella pneumoniae during treatment, Finland, December 2018

Räisänen, K., Koivula, I., Ilmavirta, H., Puranen, S., Kallonen, T., Lyytikäinen, O. & Jalava, J., 1 May 2019, In : EUROSURVEILLANCE. 24, 19, p. 1-3

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
2 Citations (Scopus)
110 Downloads (Pure)

Genome-wide epistasis and co-selection study using mutual information

Pensar, J., Puranen, S., Arnold, B., MacAlasdair, N., Kuronen, J., Tonkin-Hill, G., Pesonen, M., Xu, Y., Sipola, A., Sánchez-Busó, L., Lees, J. A., Chewapreecha, C., Bentley, S. D., Harris, S. R., Parkhill, J., Croucher, N. J. & Corander, J., 10 Oct 2019, In : Nucleic Acids Research. 47, 18, p. 1-14 e112.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
42 Downloads (Pure)
2018

Inverse finite-size scaling for high-dimensional significance analysis

Xu, Y., Puranen, S., Corander, J. & Kabashima, Y., 6 Jun 2018, In : Physical Review E. 97, 6, p. 1-9 062112.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
2 Citations (Scopus)
158 Downloads (Pure)

SuperDCA for genome-wide epistasis analysis

Puranen, S., Pesonen, M., Pensar, J., Xu, Y., Lees, J. A., Bentley, S., Croucher, N. J. & Corander, J., 29 May 2018, In : Microbial Genomics. 4, 6

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
7 Citations (Scopus)
20 Downloads (Pure)
2017

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

Skwark, M. J., Croucher, N. J., Puranen, S., Chewapreecha, C., Pesonen, M., Xu, Y., Turner, P., Harris, S. R., Beres, S. B., Musser, J. M., Parkhill, J., Bentley, S. D., Aurell, E. & Corander, J., 1 Feb 2017, In : PLoS Genetics. 13, 2, e1006508.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
28 Citations (Scopus)
129 Downloads (Pure)
2016

Probabilistic model to treat flexibility in molecular contacts

Hakulinen, R. & Puranen, S., 2016, In : MOLECULAR PHYSICS. 114, 21, p. 3201-3220 20 p.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)