Research output per year
Research output per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Doctoral degree, Natural Sciences, University of Helsinki
Award Date: 21 Nov 2008
Keywords
- Statistical Machine Learning
- Computational biology
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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Baseline gene expression in subcutaneous adipose tissue predicts diet-induced weight loss in individuals with obesity
Oghabian, A., van der Kolk, B. W., Marttinen, P., Valsesia, A., Langin, D., Saris, W. H., Astrup, A., Blaak, E. E. & Pietiläinen, K. H., Mar 2023, In: PEERJ. 11, p. 1-19 19 p., e15100.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Downloads (Pure) -
Causal Modeling of Policy Interventions From Treatment-Outcome Sequences
Hizli, C., John, ST., Juuti, A., Saarinen, T., Pietiläinen, K. & Marttinen, P., Jul 2023, Proceedings of the 40th International Conference on Machine Learning. Krause, A., Brunskill, E., Cho, K., Engelhardt, B., Sabato, S. & Scarlett, J. (eds.). JMLR, p. 13050-13084 35 p. (Proceedings of Machine Learning Research; vol. 202).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile2 Downloads (Pure) -
Contextualized Graph Embeddings for Adverse Drug Event Detection
Gao, Y., Ji, S., Zhang, T., Tiwari, P. & Marttinen, P., 17 Mar 2023, Machine Learning and Knowledge Discovery in Databases - European Conference, ECML PKDD 2022, Proceedings: European Conference, ECML PKDD 2022, Grenoble, France, September 19–23, 2022, Proceedings, Part II. Amini, M-R., Canu, S., Fischer, A., Guns, T., Kralj Novak, P. & Tsoumakas, G. (eds.). Springer, p. 605–620 16 p.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile1 Citation (Scopus)23 Downloads (Pure) -
Deformation equivariant cross-modality image synthesis with paired non-aligned training data
Honkamaa, J., Khan, U., Koivukoski, S., Valkonen, M., Latonen, L., Ruusuvuori, P. & Marttinen, P., Dec 2023, In: Medical Image Analysis. 90, p. 1-13 13 p., 102940.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile2 Downloads (Pure) -
Ethical layering in AI-driven polygenic risk scores—New complexities, new challenges
Fritzsche, M. C., Akyüz, K., Cano Abadía, M., McLennan, S., Marttinen, P., Mayrhofer, M. T. & Buyx, A. M., 26 Jan 2023, In: Frontiers in Genetics. 14, 1098439.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile2 Citations (Scopus)11 Downloads (Pure)
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CLISHEAT/Marttinen: Green and digital healthcare
Marttinen, P., Gao, Y. & John, T.
01/01/2023 → 31/12/2025
Project: Academy of Finland: Other research funding
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-: Finnish Center for Artificial Intelligence
Marttinen, P., Raj, V. & Gröhn, T.
01/01/2023 → 31/12/2024
Project: Academy of Finland: Other research funding
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-: Finnish Center for Artificial Intelligence
01/01/2023 → 31/12/2024
Project: Academy of Finland: Other research funding
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-: Finnish Center for Artificial Intelligence
Marttinen, P. & Alakuijala, M.
01/01/2023 → 31/12/2024
Project: Academy of Finland: Other research funding
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-: INTERVENE/Marttinen
Marttinen, P., Moen, H. & Raj, V.
01/01/2021 → 31/12/2025
Project: EU: Framework programmes funding
Datasets
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Data from: Cryptic ecology among host generalist Campylobacter jejuni in domestic animals
Sheppard, S. K. (Contributor), Cheng, L. (Contributor), Méric, G. (Contributor), Haan, C. (Contributor), Llarena, A. (Contributor), Marttinen, P. (Contributor), Vidal, A. (Contributor), Ridley, A. (Contributor), Clifton-Hadley, F. (Contributor), Connor, T. R. (Contributor), Strachan, N. (Creator), Forbes, K. (Creator), Colles, F. (Creator), Jolley, K. (Creator), Bentley, S. (Creator), Maiden, M. (Creator), Hänninen, M. (Creator), Parkhill, J. (Creator), Hanage, W. P. (Creator) & Corander, J. (Creator), Dryad Digital Repository, 28 Mar 2014
DOI: 10.5061/dryad.hk860, https://datadryad.org/resource/doi:10.5061/dryad.hk860 and 3 more links, https://doi.org/10.5061/dryad.hk860/1, https://doi.org/10.5061/dryad.hk860/2, https://doi.org/10.5061/dryad.hk860/3 (show fewer)
Dataset
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Data from: Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
Kashtan, N. (Contributor), Roggensack, S. E. (Contributor), Rodrigue, S. (Contributor), Thompson, J. W. (Contributor), Biller, S. J. (Contributor), Coe, A. (Contributor), Ding, H. (Contributor), Marttinen, P. (Creator), Malmstrom, R. R. (Contributor), Stocker, R. (Contributor), Follows, M. (Contributor), Stepanauskas, R. (Creator) & SW, C. (Creator), Dryad Digital Repository, 25 Apr 2014
DOI: 10.5061/dryad.9r0p6, https://datadryad.org/resource/doi:10.5061/dryad.9r0p6 and 8 more links, https://doi.org/10.5061/dryad.9r0p6/1, https://doi.org/10.5061/dryad.9r0p6/2, https://doi.org/10.5061/dryad.9r0p6/3, https://doi.org/10.5061/dryad.9r0p6/4, https://doi.org/10.5061/dryad.9r0p6/5, https://doi.org/10.5061/dryad.9r0p6/6, https://doi.org/10.5061/dryad.9r0p6/7, https://doi.org/10.5061/dryad.9r0p6/8 (show fewer)
Dataset
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Supplementary material from "Modelling methicillin-resistant Staphylococcus aureus decolonization: interactions between body sites and the impact of site-specific clearance"
Poyraz, O. (Creator), Sater, M. R. A. (Creator), Miller, L. G. (Creator), McKinnell, J. A. (Creator), Huang, S. S. (Creator), Grad, Y. H. (Creator) & Marttinen, P. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.c.6016851.v2, https://rs.figshare.com/collections/Supplementary_material_from_Modelling_methicillin-resistant_i_Staphylococcus_aureus_i_decolonization_interactions_between_body_sites_and_the_impact_of_site-specific_clearance_/6016851/2 and 3 more links, https://doi.org/10.6084/m9.figshare.c.6016851.v1, https://rs.figshare.com/collections/Supplementary_material_from_Modelling_methicillin-resistant_i_Staphylococcus_aureus_i_decolonization_interactions_between_body_sites_and_the_impact_of_site-specific_clearance_/6016851, https://rs.figshare.com/collections/Supplementary_material_from_Modelling_methicillin-resistant_i_Staphylococcus_aureus_i_decolonization_interactions_between_body_sites_and_the_impact_of_site-specific_clearance_/6016851/1 (show fewer)
Dataset
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Computational modelling of self-reported dietary carbohydrate intake on glucose concentrations in patients undergoing Roux-en-Y gastric bypass versus one-anastomosis gastric bypass
Alizadeh Ashrafi, R. (Creator), Ahola, A. J. (Contributor), Rosengård-Bärlund, M. (Contributor), Saarinen, T. (Contributor), Heinonen, S. (Contributor), Juuti, A. (Contributor), Marttinen, P. (Contributor) & Pietiläinen, K. H. (Contributor), figshare, 1 Jan 2021
DOI: 10.6084/m9.figshare.16904216.v1, https://tandf.figshare.com/articles/journal_contribution/Computational_modelling_of_self-reported_dietary_carbohydrate_intake_on_glucose_concentrations_in_patients_undergoing_Roux-en-Y_gastric_bypass_versus_one-anastomosis_gastric_bypass/16904216/1
Dataset
Activities
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PhD thesis pre-examination (Aki Koivu)
Pekka Marttinen (Examiner)
18 Nov 2021Activity: Academic assessments › Pre-examination of doctoral thesis or acting as opponent to doctoral students or membership of doctoral thesis committee or board
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PhD thesis pre-examination (Joonas Tamminen)
Pekka Marttinen (Examiner)
4 Jun 2021Activity: Academic assessments › Pre-examination of doctoral thesis or acting as opponent to doctoral students or membership of doctoral thesis committee or board
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Harvard School of Public Health
Pekka Marttinen (Visiting researcher)
20 Aug 2018 → 24 Aug 2018Activity: Visiting an external institution types › Visiting an external academic institution
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Interactive elicitation of knowledge on feature relevance improves predictions in small data sets
Pekka Marttinen (Speaker)
14 Mar 2017Activity: Talk or presentation types › Conference presentation
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Foreign Organisation
Pekka Marttinen (Visiting researcher)
5 Jun 2016 → 24 Jun 2016Activity: Visiting an external institution types › Visiting an external academic institution
Press/Media
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Interaction Detection with Probabilistic Deep Learning for Genetics
Pekka Marttinen, Samuel Kaski & Aki Havulinna
04/05/2023
1 item of Media coverage
Press/Media: Media appearance
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Aalto University Details Findings in Computing (Eeg Based Emotion Recognition: a Tutorial and Review)
01/05/2023
1 item of Media coverage
Press/Media: Media appearance
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Study Data from Aalto University Provide New Insights into Networks (Multitask Balanced and Recalibrated Network for Medical Code Prediction)
21/04/2023
1 item of Media coverage
Press/Media: Media appearance
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University of Helsinki Researcher Publishes New Studies and Findings in the Area of Obesity (Baseline gene expression in subcutaneous adipose tissue predicts diet-induced weight loss in individuals with obesity)
07/04/2023
1 item of Media coverage
Press/Media: Media appearance
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Natural Language Processing for Healthcare: Text Representation, Multitask Learning, and Applications
07/03/2023
1 item of Media coverage
Press/Media: Media appearance