Maiju Pesonen

Visiting Doctoral Candidate

Research outputs

  1. 2020
  2. Published

    High-dimensional structure learning of binary pairwise Markov networks: A comparative numerical study

    Pensar, J., Xu, Y., Puranen, S., Pesonen, M., Kabashima, Y. & Corander, J., 1 Jan 2020, In : Computational Statistics and Data Analysis. 141, p. 62-76 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2019
  4. Published

    Genome-wide epistasis and co-selection study using mutual information

    Pensar, J., Puranen, S., Arnold, B., MacAlasdair, N., Kuronen, J., Tonkin-Hill, G., Pesonen, M., Xu, Y., Sipola, A., Sánchez-Busó, L. & 7 othersLees, J. A., Chewapreecha, C., Bentley, S. D., Harris, S. R., Parkhill, J., Croucher, N. J. & Corander, J., 10 Oct 2019, In : Nucleic Acids Research. 47, 18, p. 1-14 e112.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis

    Kachroo, P., Eraso, J. M., Olsen, R. J., Beres, S. B., Zhu, L., Nasser, W., Bernard, P. E., Cantu, C. C., Saavedra, M. O., Arredondo, M. J. & 21 othersStrope, B., Do, H., Kumaraswami, M., Vuopio, J., Gröndahl-Yli-Hannuksela, K., Kristinsson, K. G., Gottfredsson, M., Pesonen, M., Pensar, J., Davenport, E. R., Clark, A. G., Corander, J., Caugant, D. A., Gaini, S., Magnussen, M. D., Kubiak, S. L., Nguyen, H. A. T., Long, S. W., Porter, A. R., DeLeo, F. R. & Musser, J. M., 1 Mar 2019, In : NATURE GENETICS. 51, 3, p. 548-559 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. 2018
  7. Published

    A Combined PLS and Negative Binomial Regression Model for Inferring Association Networks from Next-generation Sequencing Count Data

    Pesonen, M., Nevalainen, J., Potter, S., Datta, S. & Datta, S., 1 May 2018, In : IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. 15, 3, p. 760-773 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. 2017
  9. Published

    Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

    Skwark, M. J., Croucher, N. J., Puranen, S., Chewapreecha, C., Pesonen, M., Xu, Y., Turner, P., Harris, S. R., Beres, S. B., Musser, J. M. & 4 othersParkhill, J., Bentley, S. D., Aurell, E. & Corander, J., 1 Feb 2017, In : PLoS Genetics. 13, 2, e1006508.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    SuperDCA for genome-wide epistasis analysis

    Puranen, S., Pesonen, M., Pensar, J., Xu, Y. Y., Lees, J. A., Bentley, S. D., Croucher, N. J., Corander, J. & Aurell, E., 2017, In : bioRxiv.

    Research output: Contribution to journalArticleScientific

ID: 1684374