Personal profile
Education/Academic qualification
Doctoral degree, Natural Sciences, University of Helsinki
Award Date: 5 Nov 2013
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being -
SDG 14 Life Below Water
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Collaborations and top research areas from the last five years
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Computational Intelligence Methods for Bioinformatics and Biostatistics : 19th International Meeting, CIBB 2024, Benevento, Italy, September 4–6, 2024, Revised Selected Papers
Cerulo, L. (Editor), Napolitano, F. (Editor), Bardozzo, F. (Editor), Cheng, L. (Editor), Annalisa, A. (Editor) & Pagnotta, S. M. (Editor), 2025, Springer. 300 p. (Lecture Notes in Computer Science; vol. 15276)Research output: Book/Report › Anthology › Scientific › peer-review
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Driver gene detection via causal inference on single cell embeddings
Fu, C. & Cheng, L., 2025, Computational Intelligence Methods for Bioinformatics and Biostatistics : 19th International Meeting, CIBB 2024, Benevento, Italy, September 4–6, 2024, Revised Selected Papers. Cerulo, L., Napolitano, F., Bardozzo, F., Cheng, L., Occhipinti, A. & Pagnotta, S. M. (eds.). Springer, p. 123-133 11 p. (Lecture Notes in Computer Science; vol. 15276).Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review
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k-mer manifold approximation and projection for visualizing DNA sequences
Fu, C., Niskanen, E. A., Wei, G. H., Yang, Z., Sanvicente-García, M., Güell, M. & Cheng, L., May 2025, In: Genome Research. 35, 5, p. 1234-1246 13 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile2 Citations (Scopus)4 Downloads (Pure) -
NanoBaseLib: A Multi-Task Benchmark Dataset for Nanopore Sequencing
Cheng, G., Fu, C. & Cheng, L., 2025, Advances in Neural Information Processing Systems 37 (NeurIPS 2024). Globerson, A., Mackey, L., Belgrave, D., Fan, A., Paquet, U., Tomczak, J. & Zhang, C. (eds.). Curran Associates Inc., (Advances in Neural Information Processing Systems; vol. 37).Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review
Open AccessFile1 Citation (Scopus)112 Downloads (Pure) -
Raw signal segmentation for estimating RNA modification from Nanopore direct RNA sequencing data
Cheng, G., Vehtari, A. & Cheng, L., 6 Mar 2025, (E-pub ahead of print) In: eLife. 24 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
Projects
- 6 Finished
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Cheng Lu AoF costs part2: Systematic approach to study alternative splicing from scRNA-seq in cancer
Cheng, L. (Principal investigator), Cheng, G. (Project Member), Fu, C. (Project Member) & Lampinen, J. (Principal investigator)
01/09/2023 → 31/08/2025
Project: RCF Academy Research Fellow: Research costs
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AoF Mobility 2021 Cheng: Association of oral microbiota and baby delivery in pregnant women cohort
Cheng, L. (Principal investigator)
01/03/2021 → 31/12/2022
Project: RCF Researcher Mobility
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Single cell RNA sequencing analytical tools for studying cell differentiation
Cheng, L. (Project Member) & Lampinen, J. (Principal investigator)
01/09/2020 → 31/08/2025
Project: RCF Academy Research Fellow (new)
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P4 Diabetes: Personalised medicine to predict and prevent Type 1 Diabetes
Lähdesmäki, H. (Principal investigator), Somani, J. (Project Member), Cheng, L. (Project Member), Halla-aho, V. (Project Member), Vatanen, T. (Project Member), Mentu, S. (Project Member), Papatheodorou, D. (Project Member), Tikhonov, G. (Project Member), Jokinen, E. (Project Member) & Huang, D. (Project Member)
01/09/2015 → 31/08/2019
Project: Academy of Finland: Other research funding
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ELVI: Early diagnosis and prevention of autoimmune diseases – type 1 diabetes and celiac disease
Lähdesmäki, H. (Principal investigator), Cheng, L. (Project Member), Huang, D. (Project Member) & Ramchandran, S. (Project Member)
01/09/2015 → 31/08/2018
Project: Business Finland: Other research funding
Datasets
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Data from: Cryptic ecology among host generalist Campylobacter jejuni in domestic animals
Sheppard, S. K. (Contributor), Cheng, L. (Contributor), Méric, G. (Contributor), Haan, C. (Contributor), Llarena, A.-K. (Contributor), Marttinen, P. (Contributor), Vidal, A. (Contributor), Ridley, A. (Contributor), Clifton-Hadley, F. (Contributor), Connor, T. R. (Contributor), Strachan, N. (Creator), Forbes, K. (Creator), Colles, F. (Creator), Jolley, K. (Creator), Bentley, S. (Creator), Maiden, M. (Creator), Hänninen, M.-L. (Creator), Parkhill, J. (Creator), Hanage, W. P. (Creator) & Corander, J. (Creator), Dryad Digital Repository, 28 Mar 2014
DOI: 10.5061/dryad.hk860, https://datadryad.org/resource/doi:10.5061/dryad.hk860 and 3 more links, https://doi.org/10.5061/dryad.hk860/1, https://doi.org/10.5061/dryad.hk860/2, https://doi.org/10.5061/dryad.hk860/3 (show fewer)
Dataset
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NanoBaseLib: A Multi-Task Benchmark Dataset for Nanopore Sequencing
Cheng, G. (Creator), Fu, C. (Creator) & Cheng, L. (Creator), Zenodo, 17 Oct 2024
DOI: 10.5281/zenodo.10889895, https://zenodo.org/records/10889896
Dataset