Kimmo Kaski

Senior Advisor

Research outputs

  1. 2008
  2. Published

    Critical evaluation of the computational methods used in the forced polymer translocation

    Lehtola, V., Linna, R. & Kaski, K., 2008, In : Physical Review E. 78, 6, p. 61803-61010

    Research output: Contribution to journalArticle

  3. Published

    Detecting modules in dense weighted networks with the Potts method

    Heimo, T., Kumpula, J. M., Kaski, K. & Saramäki, J., 2008, In : Journal of Statistical Mechanics: Theory and Experiment. p. P08007/1-13

    Research output: Contribution to journalArticle

  4. Published

    Efficient data structures for sparse network representation

    Hyvönen, J., Saramäki, J. & Kaski, K., 2008, In : International Journal of Computer Mathematics. 85, 8, p. 1219-1233

    Research output: Contribution to journalArticle

  5. Published

    Metabolic phenotypes, vascular complications, and premature deaths in a population of 4,197 patients with type 1 diabetes

    Mäkinen, V-P., Forsblom, C., Thorn, L. M., Waden, J., Gordin, D., Heikkilä, O., Hietala, K., Kyllönen, L., Kytö, J., Rosengard-Baerlund, M. & 6 others, Saraheimo, M., Tolonen, N., Parkkonen, M., Kaski, K., Ala-Korpela, M. & Groop, P-H., 2008, In : DIABETES. 57, 9, p. 2480-2487

    Research output: Contribution to journalArticle

  6. Published

    Modelling language competition: bilingualism and complex social networks

    Castello, X., Eguíluz, V. M., San Miguel, M., Loureiro-Porto, L., Toivonen, R., Saramäki, J. & Kaski, K., 2008, 7th International Conference on the Evolution of Language (EVOLANG7), Barcelona, Spain, March 2008. Andrew D. M. Smith, K. S. (ed.). World Scientific Publishing

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  7. Published

    Multivariate biochemical basis of vascular complications and mortality in 4,197 patients with type I diabetes

    Mäkinen, V-P., Forsblom, C., Thorn, L. M., Waden, J., Gordin, D., Heikkilä, O., Hietala, K., Kytoe, J., Rosengard-Barlund, M., Saraheimo, M. & 4 others, Parkkonen, M., Kaski, K., Ala-Korpela, M. & Groop, P. H., 2008, In : Diabetologia. 51, p. pp. S548-S548

    Research output: Contribution to journalArticle

  8. Published

    Optimised methodology for 1H NMR lipidomics of serum

    Tynkkynen, T., Laatikainen, R., Tukiainen, T., Mäkinen, V. P., Groop, P-H., Kaski, K., Gröhn, O., Hallikainen, M., Soininen, H., Pirttilä, T. & 2 others, Ala-Korpela, M. & Soininen, P., 2008, (The 30th Finnish NMR Symposium, June 11-13, Helsinki, Finland, 2008).

    Research output: Working paperProfessional

  9. Published

    Reconsideration of hydrophobic lipid distributions in lipoprotein particles

    Kumpula, L., Kumpula, J., Taskinen, M-R., Jauhiainen, M., Kaski, K. & Ala-Korpela, M., 2008, In : Chemistry and Physics of Lipids. 155, 1, p. 57-62

    Research output: Contribution to journalArticle

  10. Published

    Sequential algorithm for fast clique percolation

    Kumpula, J. M., Kivelä, M., Kaski, K. & Saramäki, J., 2008, In : Physical Review E. 78, 2, p. 026109

    Research output: Contribution to journalArticle

  11. Published

    Spectral methods and cluster structure in correlation-based networks

    Heimo, T., Tibely, G., Saramäki, J., Kaski, K. & Kertész, J., 2008, In : Physica A: Statistical Mechanics and its Applications. 387, 23, p. 5930-5945

    Research output: Contribution to journalArticle

  12. Published

    The International Trade Network: weighted network analysis and modelling

    Bhattacharya, K., Mukherjee, G., Saramäki, J., Kaski, K. & Manna, S. S., 2008, In : Journal of Statistical Mechanics: Theory and Experiment. p. P02002/1-10

    Research output: Contribution to journalArticle

  13. Published

    Towards the Multicomponent MDL Denoising

    Ojanen, J., Heikkonen, J. & Kaski, K., 2008, Festschrift in Honor of Jorma Rissanen on the Occasion of his 75th Birthday. Grünwald, P., Myllymäki, P., Tabus, I., Weinberger, M. & Yu, B. (eds.). Tampere: Tampere International Center for signal Processing, p. 205-212

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  14. 2007
  15. Published

    1H NMR at 800 MHz Facilitates Detailed Phospholipid Follow-Up during Atherogenic Modifications in Low Density Lipoproteins

    Soininen, P., Öörni, K., Maaheimo, H., Laatikainen, R., Kovanen, P. T., Kaski, K. & Ala-Korpela, M., 2007, In : Biochemical and Biophysical Research Communications. 360, 1, p. 290–294

    Research output: Contribution to journalArticle

  16. Published

    1H NMR metabonomics of plasma lipoprotein subclasses: elucidation of metabolic clustering by self-organising maps

    Suna, T., Salminen, A., Soininen, P., Laatikainen, R., Ingman, P., Mäkelä, S., Savolainen, M. J., Hannuksela, M. L., Jauhiainen, M., Taskinen, M-R. & 2 others, Kaski, K. & Ala-Korpela, M., 2007, In : NMR in Biomedicine. 20, p. 658-672 15 p.

    Research output: Contribution to journalArticle

  17. Published

    1H NMR metabonomics of serum in identifying lipoprotein subclass metabolism in the borkerline of health and disease

    Ala-Korpela, M., Mäkinen, V-P., Soininen, P., Brezmes, J., Salminen, A., Lankinen, N., Suna, T., Ingman, P., Cañellas, N., Mäkelä, S. & 6 others, Savolainen, M., Hannuksela, M., Forsblom, C., Correig, X., Groop, P-H. & Kaski, K., 2007, (The 29th Finnish NMR Symposium, June 13-15, Turku, FInland, 2007).

    Research output: Working paperProfessional

  18. Published

    1H NMR metabonomics of serum to identify and classify lipoprotein subclass profiles

    Ala-Korpela, M., Mäkelä, S., Salminen, A., Soininen, P., Suna, T., Lankinen, N., Ingman, P., Savolainen, M. J., Taskinen, M-R., Hannuksela, M. & 2 others, Jauhiainen, M. & Kaski, K., 2007, (The 76th Annual Congress of The European Atherosclerosis Society (EAS), June 10-13, Helsinki, Finland, 2007).

    Research output: Working paperProfessional

  19. Published
  20. Published

    1H NMR metabonomics of type 1 diabetes: a holistic approach to metabolic syndrome

    Mäkinen, V-P., Soininen, P., Forsblom, C., Parkkonen, M., Ingman, P., Kaski, K., Groop, P-H. & Ala-Korpela, M., 2007, The 2nd International Congress on Prediabetes and the Metabolic Syndrome, April 25-28, Barcelona, Spain, 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  21. Published

    1H NMR metabonomics of type 1 diabetes: a holistic approach to metabolic syndrome

    Mäkinen, V-P., Soininen, P., Forsblom, C., Ingman, P., Kaski, K., Groop, P-H. & Ala-Korpela, M., 2007, The 76th Annual Congress of the European Atherosclerosis Society (EAS), June 8-9, Turku, Finland, 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  22. Published

    1H NMR metabonomics to identify lipoprotein subclass profile: Metabolic syndrome at the borderline of health and disease

    Ala-Korpela, M., Mäkinen, V-P., Soininen, P., Brezmes, J., Salminen, A., Lankinen, N., Suna, T., Ingman, P., Cañellas-Alberich, N., Mäkelä, S. & 6 others, Savolainen, M., Hannuksela, M., Forsblom, C., Correig-Blanchar, X., Groop, P-H. & Kaski, K., 2007, (EUROMAR Magnetic Resonance Conference, July 1-6, Tarragona, Spain, 2007).

    Research output: Working paperProfessional

  23. Published

    Affinity propagation algorithms: A new way to classify 1H NMR metabonomics data on serum lipoproteins

    Cañellas, N., Brezmes, J., Salminen, A., Soininen, P., Kaski, K., Correig, X. & Ala-Korpela, M., 2007, (The Conferentia Chemometrica 2007 (2007), September 2-5, Budapest, Hungary, 2007).

    Research output: Working paperProfessional

  24. Published

    Analysis of a large-scale weighted network of one-to-one human communications

    Onnela, J-P., Saramäki, J., Hyvönen, J., Szabó, G., Argollo de Menezes, M., Kaski, K., Barabási, A-L. & Kertész, J., 2007, In : New Journal of Physics. 9, 179

    Research output: Contribution to journalArticle

  25. Published

    Anomalous lifetime distributions and topological traps in ordering dynamics

    Castelló, X., Toivonen, R., Equíluz, V. M., Saramäki, J., Kaski, K. & San Miguel, M., 2007, In : Europhysics Letters. 79, 66006

    Research output: Contribution to journalArticle

  26. Published

    A novel Bayesian approach to quantify clinical variables and to determine their spectroscopic counterparts in 1H NMR metabonomic data

    Vehtari, A., Mäkinen, V-P., Soininen, P., Ingman, P., Mäkelä, S. M., Savolainen, M. J., Hannuksela, M. L., Kaski, K. & Ala-Korpela, M., 2007, In : BMC Bioinformatics. 8, Supplement 2, p. S8

    Research output: Contribution to journalArticle

  27. Published

    Application of 1H NMR spectroscopy of serum to study alcohol-related metabolic effects

    Peltola, T., Mäkinen, V-P., Mäkelä, S., Laitinen, M., Soininen, P., Ingman, P., Nissinen, A., Savolainen, M., Hannuksela, M., Kaski, K. & 1 others, Ala-Korpela, M., 2007, (The 29th Finnish NMR Symposium, June 13-15, Turku, Finland, 2007).

    Research output: Working paperProfessional

  28. Published

    A probabilistic approach to the assessment of metabolic synrome using 1H NMR spectroscopy of serum and Fuzzy Artmap neural networks

    Brezmes, J., Cañellas, N., Salminen, A., Soininen, P., Kaski, K., Correig, X. & Ala-Korpela, M., 2007, The Conferentia Chemometrica2007 (200), September 2-5, Budapest, Hungary, 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  29. Published

    A quantitative Bayesian approach to metabonomic 1H NMR data of serum

    Jylänki, P., Niemi, J., Mäkinen, V-P., Salminen, A., Vanhatalo, L., Soininen, P., Ingman, P., Kaski, K., Groop, P-H., Vehtari, A. & 1 others, Ala-Korpela, M., 2007, The Conferentia Chemometrica 2007 (CC 2007), September 2-5, Budapest, Hungary.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  30. Published

    Assessment of multi-molecular associations in cognitive decline by 1H NMR metabonomics of serum

    Tukiainen, T., Hokkanen, J., Mäkinen, V-P., Tynkkynen, T., Soininen, P., Gröhn, O., Hallikainen, M., Soininen, H., Kaski, K., Laatikainen, R. & 2 others, Pirttilä, T. & Ala-Korpela, M., 2007, The 29th Finnish NMR Symposium, June 13-15, Turku, Finland, 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  31. Published

    Atherosclerotic serum lipoprotein profiles predispose to Alzheimer´s disease - a pilot study by 1H NMR metabonomics

    Hokkanen, J., Tukiainen, T., Mäkinen, V-P., Tynkkynen, T., Soininen, P., Gröhn, O., Hallikainen, M., Soininen, H., Kaski, K., Laatikainen, R. & 2 others, Pirttilä, T. & Ala-Korpela, M., 2007, (The 29th Finnis NMR Symposium, June 13-15, Turku, Finland, 2007).

    Research output: Working paperProfessional

  32. Published
  33. Published

    Complex turing patterns in non-linearly coupled systems

    Kyttä, K., Kaski, K. & Barrio, R. A., 2007, In : Physica A: Statistical Mechanics and its Applications. 385, 1, p. 105-114

    Research output: Contribution to journalArticle

  34. Published

    Compositional and metabolic associations of lipids in VLDL, IDL, LDL, HDL2 and HDL3 by self-organising maps

    Kumpula, L. S., Mäkelä, S., Mäkinen, V-P., Savolainen, M. J., Kaski, K., Hannuksela, M. L. & Ala-Korpela, M., 2007, p. 212. 1 p.

    Research output: Contribution to conferencePaperScientific

  35. Published

    Detailed phospholipid lollow-up during atherogenic modifications of lipoprotein particle by 1H NMR at 800 MHz

    Soininen, P., Öörni, K., Maaheimo, H., Laatikainen, R., Kovanen, P. T., Kaski, K. & Ala-Korpela, M., 2007, (The 29th Finnish NMR Symposium, June 13-15, Turku, Finland, 2007).

    Research output: Working paperProfessional

  36. Published

    Emergence of communities in weighted complex networks

    Kumpula, J. M., Onnela, J-P., Saramäki, J., Kaski, K. & Kertész, J., 2007, In : Physical Review Letters. 99, 228701

    Research output: Contribution to journalArticle

  37. Published

    Emergence of self-sustained patterns in small-world excitable media

    Sinha, S., Saramäki, J. & Kaski, K., 2007, In : Physical Review E. 76, 1, p. 015101 4 p.

    Research output: Contribution to journalArticle

  38. Published

    Generalizations of the clustering coefficient to weighted complex networks

    Saramäki, J., Kivelä, M., Onnela, J-P., Kaski, K. & Kertész, J., 2007, In : Physical Review E. 75, 027105

    Research output: Contribution to journalArticle

  39. Published

    Identification of lipoprotein subclass profile characteristic to metabolic syndrome by proton NMR metabonomics of serum

    Ala-Korpela, M., Suna, T., Salminen, A., Brezmes, J., Soininen, P., Tynkkynen, T., Mäkelä, S. M., Lankinen, N., Peltola, T., Kumpula, L. S. & 8 others, Mäkinen, V-P., Savolainen, M. J., Correig, X., Laatikainen, R., Taskinen, M-R., Jauhiainen, M., Hannuksela, M. L. & Kaski, K., 2007, The 76th Annual Congress of the European Atherosclerosis Society (EAS), June 8-9, Turku, Finland, 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  40. Published

    Limited resolution and multiresolution methods in complex network community detection

    Kumpula, J. M., Saramaki, J., Kaski, K. & Kertesz, J., 2007, In : FLUCTUATION AND NOISE LETTERS. 7, 3, p. pp. L209-L214

    Research output: Contribution to journalArticle

  41. Published

    Limited resolution and multiresolution methods in complex networks community detection

    Kumpula, J., Saramäki, J., Kaski, K. & Kertész, J., 2007, Noise and Stochastics in Complex Systems and Finance, 20.-24.5.2007, Firenze, Italia. Kertész et al, J. (ed.).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  42. Published
  43. Published

    Molecular dynamics simulations of temperature-induced structural transitions at twist boundaries in silicon

    Von Alfthan, S., Kaski, K. & Sutton, A. P., 2007, In : Physical Review B. 76, 24, 245317.

    Research output: Contribution to journalArticle

  44. Published

    Multi-metabolite characterisation of the diabetic state by 1H NMR metabonomics - application of self-organising maps

    Mäkinen, V-P., Soininen, P., Kaski, K., Groop, P-H. & Ala-Korpela, M., 2007, (The Conferentia Chemometrica 2007 (2007), September 2-5, Budapest, Hungary).

    Research output: Working paperProfessional

  45. Published

    Multi-metabolite characterization of the diabetic state by 1H NMR metabonomics

    Mäkinen, V-P., Soininen, P., Forsblom, C., Parkkonen, M., Ingman, P., Kaski, K. & Groop, P-H., 2007, The 29th Finnish NMR Symposium June 13-15, Turku, Finland, 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  46. Published

    Proton NMR metabonomics of serum to identify lipoprotein subclass distribution in the borkerline of health and disease: case metabolic sydrome

    Ala-Korpela, M., Brezmes, J., Tynkkynen, T., Mäkelä, S. M., Soininen, P., Salminen, A., Suna, T., Lankinen, N., Peltola, T., Kumpula, L. S. & 8 others, Mäkinen, V-P., Savolainen, M. J., Correig-Blanchar, X., Laatikainen, R., Taskinen, M-R., Jauhiainen, M., Hannuksela, M. L. & Kaski, K., 2007, (The 2nd International Congress on Prediabetes and the Metabolic Syndrome, April 25-28, Barcelona, Spain, 2007).

    Research output: Working paperProfessional

  47. Published

    Proton NMR metabonomics of type 1 diabetes reveals multivariate biochemical characteristics of diabetic complications

    Mäkinen, V-P., Soininen, P., Forsblom, C., Parkkonen, M., Ingman, P., Kaski, K., Ala-Korpela, M. & Groop, P-H., 2007, In : Diabetologia. 50, 1, S466

    Research output: Contribution to journalArticle

  48. Published

    Proton NMR metabonomics of type 1 diabetes reveals multivariate biochemical characteristics of diabetic complications

    Mäkinen, V-P., Soininen, P., Forsblom, C., Parkkonen, M., Ingman, P., Kaski, K., Ala-Korpela, M. & Groop, P-H., 2007, (The Netherlands, 2007).

    Research output: Working paperProfessional

  49. Published

    Spectral and network methods in the analysis of correlation matrices of stock returns

    Heimo, T., Saramäki, J., Onnela, J-P. & Kaski, K., 2007, In : Physica A: Statistical Mechanics and its Applications. 383, 147, p. 147-151

    Research output: Contribution to journalArticle

  50. Published

    Structure and tie strengths in mobile communication networks

    Onnela, J-P., Saramäki, J., Hyvönen, J., Szabó, G., Lazer, D., Kaski, K., Kertész, J. & Barabási, A-L., 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 7332

    Research output: Contribution to journalArticle

  51. Published

    Temperature-induced structural transitions at twist boundaries in silicon

    von Alfthan, S., Sutton, A. & Kaski, K., 2007, In : Physical Review B. 76

    Research output: Contribution to journalArticle

  52. Published

    The inherent accuracy of H-1 NMR spectroscopy to quantify plasma lipoproteins is subclass dependent

    Ala-Korpela, M., Lankinen, N., Salminen, A., Suna, T., Soininen, P., Laatikainen, R., Ingman, P., Jauhiainen, M., Taskinen, M-R., Héberger, K. & 1 others, Kaski, K., 2007, In : Atherosclerosis. 190, 2, p. 352–358

    Research output: Contribution to journalArticle

ID: 66086