Harri Lähdesmäki

Professor (Associate Professor)

Research outputs

  1. 2010
  2. Published

    Effects of endocrine therapy on mRNA and microRNA expression profiles in prostate cancer

    Lehmusvaara, S., Erkkilä, T., Lähdesmäki, H., Kujala, P., Tammela, T. L. J. & Visakorpi, T., 2010, The AACR 101st Annual Meeting 2010.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionProfessional

  3. Published

    Efficient learning of signaling network model structures using Bayesian networks

    Larjo, A. & Lähdesmäki, H., 2010, RECOMB The 7th Annual RECOMB Satellite on Regulatory Genomics, the 6th Annual RECOMB Satellite on Systems Biology, and the 5th Annual DREAM reverse engineering challenges.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionProfessional

  4. Published

    Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming

    Elo, L. L., Järvenpää, H., Tuomela, S., Raghav, S., Ahlfors, H., Laurila, K., Gupta, B., Lund, R. J., Tahvanainen, J., Hawkins, R. D. & 6 others, Oresic, M., Lähdesmäki, H., Rasool, O., Rao, K. V., Aittokallio, T. & Lahesmaa, R., 2010, In : IMMUNITY. 32, 6, p. 852-862

    Research output: Contribution to journalArticle

  5. Published

    Inferring genetic regulatory interactions from time-collapsed Boolean summary variables

    Erkkilä, T., Thorsson, V., Lähdesmäki, H. & Shmulevich, I., 2010, Seventh International Workshop on Computational Systems Biology, WCSB 2010.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionProfessional

  6. Published

    Learning gene regulatory networks with delayed ODEs and continuous-time expression representation

    Äijö, T., Yli-Harja, O. & Lähdesmäki, H., 2010, Seventh International Workshop on Computational Systems Biology, WCSB 2010.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionProfessional

  7. Published
  8. Published

    Probabilistic analysis of gene expression measurements from heterogeneous tissues

    Erkkilä, T., Lehmusvaara, S., Ruusuvuori, P., Visakorpi, T., Shmulevich, I. & Lähdesmäki, H., 2010, In : Bioinformatics. 26, 20, p. 2571-2577

    Research output: Contribution to journalArticle

  9. Published

    Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network

    Aho, T., Almusa, H., Matilainen, J., Larjo, A., Ruusuvuori, P., Aho, K-L., Wilhelm, T., Lähdesmäki, H., Beyer, A., Harju, M. & 4 others, Chowdhury, S., Leinonen, K., Roos, C. & Yli-Harja, O., 2010, In : PloS one. 5, 5, p. 1-13 e10662.

    Research output: Contribution to journalArticle

  10. Published

    The effect of AR expression level on the chromatin binding of the receptor

    Urbanucci, A., Sahu, B., Seppälä, J., Kukkola, S., Waltering, K., Lähdesmäki, H., Jänne, O. & Visakorpi, T., 2010, The AACR 101st Annual Meeting 2010.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionProfessional

  11. 2009
  12. Published

    A probabilistic model for competitive binding of transcription factors

    Laurila, K. & Lähdesmäki, H., 2009, Sixth International Workshop on Computational Systems Biology, WCSB 2009.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  13. Published

    A probabilistic model for competitive binding of transcription factors

    Laurila, K. & Lähdesmäki, H., 2009, (The 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB)).

    Research output: Working paperProfessional

  14. Published

    A unified probabilistic framework for clustering genes from gene expression and protein-protein interaction data

    Dai, X. & Lähdesmäki, H., 2009, Sixth International Workshop on Computational Systems Biology, WCSB 2009.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  15. Published

    Incorporating spatial information of heterogeneous cell populations into Bayesian mRNA- and miRNA-expression analysis

    Erkkilä, T., Ruusuvuori, P., Lehmusvaara, S., Visakorpi, T., Shmulevich, I. & Lähdesmäki, H., 2009, (Joint RECOMB Satellite on Regulatory Genomics, Systems Biology, and DREAM reverse engineering challenges).

    Research output: Working paperProfessional

  16. Published

    Learning gene regulatory networks from gene expression measurements using non-parametric molecular kinetics

    Äijö, T. & Lähdesmäki, H., 2009, In : Bioinformatics. 25, p. 2937-2944

    Research output: Contribution to journalArticle

  17. Published

    Learning gene regulatory networks with delayed ODEs and continuous-time expression representation

    Äijö, T. & Lähdesmäki, H., 2009, (Joint RECOMB Satellite on Regulatory Genomics, Systems Biology, and DREAM reverse engineering challenges).

    Research output: Working paperProfessional

  18. Published

    Learning the structure of a gene regulatory network from gene expression measurements using non-parametric molecular kinetics

    Äijö, T. & Lähdesmäki, H., 2009, (The 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB)).

    Research output: Working paperProfessional

  19. Published

    Protein-protein interactions improve multiple transcription factor binding site prediction

    Laurila, K., Pukkila, H., Yli-Harja, O. & Lähdesmäki, H., 2009, (Joint RECOMB Satellite on Regulatory Genomics, Systems Biology, and DREAM reverse engineering challenges).

    Research output: Working paperProfessional

  20. Published

    Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network

    Aho, T., Almusa, H., Matilainen, J., Larjo, A., Ruusuvuori, P., Aho, K-L., Wilhelm, T., Lähdesmäki, H., Beyer, A., Harju, M. & 4 others, Chowdhury, S., Leinonen, K., Roos, C. & Yli-Harja, O., 2009, (Joint RECOMB Satellite on Regulatory Genomics, Systems Biology, and DREAM reverse engineering challenges).

    Research output: Working paperProfessional

  21. Published
  22. 2008
  23. Published

    Decomposing gene expression into regulatory and differential parts with Bayesian data fusion

    Nikkilä, J., Erkkilä, T. & Lähdesmäki, H., 2008, Proceedings of WCSB 2008, The Fifth International Workshop on Computational Systems Biology, Leipzig, Germany, 11-13 June, 2008.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Previous 1 2 3 Next

ID: 51900