Search results

• Modeling binding specificities of transcription factor pairs with random forests

  Antikainen, A. A. (Creator), Heinonen, M. (Creator) & Lähdesmäki, H. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.c.6031779.v1, https://springernature.figshare.com/collections/Modeling_binding_specificities_of_transcription_factor_pairs_with_random_forests/6031779/1 and 2 more links, https://doi.org/10.6084/m9.figshare.20003418.v1, https://doi.org/10.6084/m9.figshare.20003421.v1 (show fewer)

  Dataset

• Probabilistic modeling methods for cell-free DNA methylation based cancer classification

  Halla-aho, V. (Creator) & Lähdesmäki, H. (Contributor), figshare, 1 Jan 2022

  DOI: 10.6084/m9.figshare.c.5931075.v1, https://springernature.figshare.com/collections/Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/5931075/1 and 4 more links, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518510/1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518513/1, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518516/1, https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518507/1 (show fewer)

  Dataset

• Additional file 3 of Probabilistic modeling methods for cell-free DNA methylation based cancer classification

  Halla-aho, V. (Creator) & Lähdesmäki, H. (Creator), figshare, 5 Apr 2022

  DOI: 10.6084/m9.figshare.19518513, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518513

  Dataset

• Additional file 2 of Probabilistic modeling methods for cell-free DNA methylation based cancer classification

  Halla-aho, V. (Creator) & Lähdesmäki, H. (Creator), figshare, 5 Apr 2022

  DOI: 10.6084/m9.figshare.19518510, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518510

  Dataset

• Additional file 2 of Modeling binding specificities of transcription factor pairs with random forests

  Antikainen, A. A. (Creator), Heinonen, M. (Creator) & Lähdesmäki, H. (Creator), figshare, 6 Jun 2022

  DOI: 10.6084/m9.figshare.20003421, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Modeling_binding_specificities_of_transcription_factor_pairs_with_random_forests/20003421

  Dataset

• Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data

  Intosalmi, J. (Contributor), Ahlfors, H. (Contributor), Rautio, S. (Contributor), Mannerström, H. (Creator), Chen, Z. (Contributor), Lahesmaa, R. (Contributor), Stockinger, B. (Contributor) & Lähdesmäki, H. (Contributor), figshare, 1 Jan 2015

  DOI: 10.6084/m9.figshare.c.3612158.v1, https://figshare.com/collections/Analyzing_Th17_cell_differentiation_dynamics_using_a_novel_integrative_modeling_framework_for_time-course_RNA_sequencing_data/3612158/1

  Dataset

• Additional file 2 of LuxHMM: DNA methylation analysis with genome segmentation via hidden Markov model

  Malonzo, M. H. (Creator) & Lähdesmäki, H. (Creator), figshare, 13 Apr 2023

  DOI: 10.6084/m9.figshare.22610645.v1, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_LuxHMM_DNA_methylation_analysis_with_genome_segmentation_via_hidden_Markov_model/22610645/1

  Dataset

• Additional file 4 of Probabilistic modeling methods for cell-free DNA methylation based cancer classification

  Halla-aho, V. (Creator) & Lähdesmäki, H. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19518516, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518516

  Dataset

• A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways

  Äijö, T. (Creator), Huang, Y.-H. (Contributor), Mannerström, H. (Creator), Chavez, L. (Contributor), Tsagaratou, A. (Contributor), Rao, A. (Contributor) & Lähdesmäki, H. (Creator), figshare, 1 Jan 2016

  DOI: 10.6084/m9.figshare.c.3604346.v1, https://figshare.com/collections/A_probabilistic_generative_model_for_quantification_of_DNA_modifications_enables_analysis_of_demethylation_pathways/3604346/1

  Dataset

• Identification of global regulators of T-helper cell lineage specification

  Kanduri, K. (Creator), Tripathi, S. (Creator), Larjo, A. (Creator), Mannerström, H. (Creator), Ullah, U. (Creator), Lund, R. (Creator), Hawkins, D. (Creator), Ren, B. (Creator), Lähdesmäki, H. (Creator) & Lahesmaa, R. (Creator), figshare, 1 Jan 2015

  DOI: 10.6084/m9.figshare.c.3642353.v1, https://figshare.com/collections/Identification_of_global_regulators_of_T-helper_cell_lineage_specification/3642353/1

  Dataset

• Permutation-based significance analysis reduces the type 1 error rate in bisulfite sequencing data analysis of human umbilical cord blood samples

  Laajala, E. (Creator), Halla-aho, V. (Creator), Grönroos, T. (Creator), Kalim, U. U. (Creator), Vähä-Mäkilä, M. (Creator), Nurmio, M. (Creator), Kallionpää, H. (Creator), Lietzén, N. (Creator), Mykkänen, J. (Creator), Rasool, O. (Creator), Toppari, J. (Creator), University, M. (Creator), Knip, M. (Creator), Lund, R. (Creator), Lahesmaa, R. (Creator) & Lähdesmäki, H. (Creator), figshare, 2022

  DOI: 10.6084/m9.figshare.19311109.v2, https://tandf.figshare.com/articles/dataset/Permutation-based_significance_analysis_reduces_the_type_1_error_rate_in_bisulfite_sequencing_data_analysis_of_human_umbilical_cord_blood_samples/19311109/1

  Dataset

• LuxHMM: DNA methylation analysis with genome segmentation via hidden Markov model

  Malonzo, M. H. (Creator) & Lähdesmäki, H. (Creator), figshare, 13 Apr 2023

  DOI: 10.6084/m9.figshare.c.6584741, https://springernature.figshare.com/collections/LuxHMM_DNA_methylation_analysis_with_genome_segmentation_via_hidden_Markov_model/6584741

  Dataset