Research Output per year
Personal profile
Keywords
- Bioinformatics
- Computational systems biology
- Machine learning
- Probabilistic modelling
- Data mining
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Network
Recent external collaboration on country level. Dive into details by clicking on the dots.
Research Output
A personalised approach for identifying disease-relevant pathways in heterogeneous diseases
Somani, J., Ramchandran, S. & Lähdesmäki, H., 1 Dec 2020, In : npj Systems Biology and Applications. 6, 1, 17.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Enhancer prediction in the human genome by probabilistic modelling of the chromatin feature patterns
Osmala, M. & Lähdesmäki, H., 20 Jul 2020, In : BMC Bioinformatics. 21, 1, 37 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
A Mathematical Model for Enhancer Activation Kinetics During Cell Differentiation
Nousiainen, K., Intosalmi, J. & Lähdesmäki, H., 1 Jan 2019, Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings. Vega-Rodríguez, M. A., Holmes, I. & Martín-Vide, C. (eds.). p. 191-202 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
An additive Gaussian process regression model for interpretable non-parametric analysis of longitudinal data
Cheng, L., Ramchandran, S., Vatanen, T., Lietzén, N., Lahesmaa, R., Vehtari, A. & Lähdesmäki, H., 17 Apr 2019, In : Nature Communications. 10, 1, p. 1-11 11 p., 1798.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Bayesian metabolic flux analysis reveals intracellular flux couplings
Heinonen, M., Osmala, M., Mannerström, H., Wallenius, J., Kaski, S., Rousu, J. & Lähdesmäki, H., 15 Jul 2019, In : Bioinformatics. 35, 14, p. i548-i557 btz315.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access
File
Projects
Bridging the Reality Gap in Autonomous Learning
Lähdesmäki, H. & Iakovlev, V.
01/01/2020 → 31/12/2022
Project: Academy of Finland: Other research funding
FCAI: Finnish Center for Artificial Intelligence (FCAI)
01/01/2019 → 31/12/2022
Project: Academy of Finland: Other research funding
Immunoregulation and Therapeutic Precision in Rheumatoid Arthritis
Jokinen, E., Lähdesmäki, H., Rehn, E. & Dumitrescu, A.
01/01/2018 → 31/12/2020
Project: Academy of Finland: Other research funding
Quantifying molecular networks at single-cell level
Lähdesmäki, H., Mannerström, H., Intosalmi, J., Somani, J., Tikhonov, G. & Gadd, C.
01/09/2017 → 31/08/2021
Project: Academy of Finland: Other research funding
FGCI: Finnish Grid and Cloud Infrastructure Stage 2 : enabling data sciences
01/01/2018 → 31/12/2019
Project: Academy of Finland: Other research funding
Datasets
Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data
Mannerström, H. (Creator), 1 Jan 2015
DOI: 10.6084/m9.figshare.c.3612158.v1, https://figshare.com/collections/Analyzing_Th17_cell_differentiation_dynamics_using_a_novel_integrative_modeling_framework_for_time-course_RNA_sequencing_data/3612158/1
Dataset
A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways
Äijö, T. (Contributor), 1 Jan 2016
DOI: 10.6084/m9.figshare.c.3604346.v1, https://figshare.com/collections/A_probabilistic_generative_model_for_quantification_of_DNA_modifications_enables_analysis_of_demethylation_pathways/3604346/1
Dataset
Prizes
Elias Tillandz prize 2012 for article
Harri Lähdesmäki (Recipient), 2012
Prize: Award or honor granted for a specific work
Elias Tillandz prize 2013 for article
Harri Lähdesmäki (Recipient), 2013
Prize: Award or honor granted for a specific work
IARIA Best Paper Award for our paper
Harri Lähdesmäki (Recipient), 2008
Prize: Award or honor granted for a specific work
Tampere Science Foundation award for the best doctoral thesis
Harri Lähdesmäki (Recipient), 2005
Prize: Award or honor granted for a specific work
The first position in the 5th Dialogue for Reverse Engineering Assessments and Methods (DREAM)
Harri Lähdesmäki (Recipient), 16 Nov 2010
Prize: Award or honor granted for a specific work
Activities
Foreign Organisation
Harri Lähdesmäki (Visiting researcher)18 May 2016
Activity: Visiting an external institution types › Visit abroad
Evaluator of a docent application, at University of Helsinki
Harri Lähdesmäki (Examiner)2016
Activity: Examination types › Statement of assessment of docentship
Foreign Organisation
Harri Lähdesmäki (Visiting researcher)30 Mar 2016 → 3 Apr 2016
Activity: Visiting an external institution types › Visit abroad
School of Science (Organisational unit)
Harri Lähdesmäki (Member)Mar 2016 → Jan 2017
Activity: Membership types › Position of trust in an academic community
International Workshop on Machine Learning in Systems Biology
Harri Lähdesmäki (Member)3 Sep 2016 → 4 Sep 2016
Activity: Participating in or organising an event types › Membership of an organizing committee or other positions of trust of a conference or a seminar
Press / Media
Biologisten mekanismien alkulähteillä
16/05/2019
1 item of Media coverage
Press/Media: Media appearance
Aalto University team wins AI research award
Harri Lähdesmäki, Markus Heinonen & Samuel Kaski
24/04/2019
1 item of Media coverage
Press/Media: Media appearance
snpEnrichR: analyzing co-localization of SNPs and their proxies in genomic regions
Harri Lähdesmäki & Kari Nousiainen
07/06/2018
1 item of Media coverage
Press/Media: Media appearance
Finnish Research Group Discovers a New Immune System Regulator
22/02/2018
1 item of Media coverage
Press/Media: Media appearance
New Insights into Mechanisms Regulating Gene Expression in Embryonic Stem Cells
Harri Lähdesmäki & Maia Malonzo
31/05/2017
1 item of Media coverage
Press/Media: Media appearance