20082019

Research output per year

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Research Output

2019

Limits to anatomical accuracy of diffusion tractography using modern approaches

Schilling, K. G., Nath, V., Hansen, C., Parvathaneni, P., Blaber, J., Gao, Y., Neher, P., Aydogan, D. B., Shi, Y., Ocampo-Pineda, M., Schiavi, S., Daducci, A., Girard, G., Barakovic, M., Rafael-Patino, J., Romascano, D., Rensonnet, G., Pizzolato, M., Bates, A., Fischi, E. & 22 others, Thiran, J. P., Canales-Rodríguez, E. J., Huang, C., Zhu, H., Zhong, L., Cabeen, R., Toga, A. W., Rheault, F., Theaud, G., Houde, J. C., Sidhu, J., Chamberland, M., Westin, C. F., Dyrby, T. B., Verma, R., Rathi, Y., Irfanoglu, M. O., Thomas, C., Pierpaoli, C., Descoteaux, M., Anderson, A. W. & Landman, B. A., 15 Jan 2019, In : NeuroImage. 185, p. 1-11 11 p.

Research output: Contribution to journalArticleScientificpeer-review

27 Citations (Scopus)
2018

Modeling topographic regularity in structural brain connectivity with application to tractogram filtering

Wang, J., Aydogan, D. B., Varma, R., Toga, A. W. & Shi, Y., 1 Dec 2018, In : NeuroImage. 183, p. 87-98 12 p.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Tracking and validation techniques for topographically organized tractography

Aydogan, D. B. & Shi, Y., 1 Nov 2018, In : NeuroImage. 181, p. 64-84 21 p.

Research output: Contribution to journalArticleScientificpeer-review

3 Citations (Scopus)

When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity

Aydogan, D. B., Jacobs, R., Dulawa, S., Thompson, S. L., Francois, M. C., Toga, A. W., Dong, H., Knowles, J. A. & Shi, Y., 1 Jul 2018, In : Brain Structure and Function. 223, 6, p. 2841-2858 18 p.

Research output: Contribution to journalArticleScientificpeer-review

11 Citations (Scopus)
2017

Topographic regularity for tract filtering in brain connectivity

Wang, J., Aydogan, D. B., Varma, R., Toga, A. W. & Shi, Y., 1 Jan 2017, Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Proceedings. p. 263-274 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10265 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

6 Citations (Scopus)
2016

Probabilistic tractography for topographically organized connectomes

Aydogan, D. B. & Shi, Y., 1 Jan 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, p. 201-209 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

8 Citations (Scopus)
2015

Track filtering via iterative correction of TDI topology

Aydogan, D. B. & Shi, Y., 1 Jan 2015, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018: 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings. Springer Verlag, p. 20-27 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9349).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

5 Citations (Scopus)
2014

Characterization of microstructures using contour tree connectivity for fluid flow analysis

Aydogan, D. B. & Hyttinen, J., 6 Jun 2014, In : Journal of the Royal Society Interface. 11, 95, 20131042.

Research output: Contribution to journalArticleScientificpeer-review

8 Citations (Scopus)

Direct laser writing of synthetic poly(amino acid) hydrogels and poly(ethylene glycol) diacrylates by two-photon polymerization

Käpylä, E., Sedlačík, T., Aydogan, D. B., Viitanen, J., Rypáček, F. & Kellomäki, M., 1 Oct 2014, In : Materials Science and Engineering C. 43, p. 280-289 10 p.

Research output: Contribution to journalArticleScientificpeer-review

18 Citations (Scopus)
2013

Analysis of trabecular bone microstructure using contour tree connectivity

Aydogan, D. B., Moritz, N., Aro, H. T. & Hyttinen, J., 24 Oct 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 2 ed. p. 428-435 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8150 LNCS, no. PART 2).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Contour tree connectivity of binary images from algebraic graph theory

Aydogan, D. B. & Hyttinen, J., 1 Dec 2013, 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings. p. 3054-3058 5 p. 6738629

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

6 Citations (Scopus)

Simulation of microporous architecture's effects on fluid flow characteristics in cell seeding

Bonabi, A., Aydogan, D. B. & Hyttinen, J., 5 Aug 2013, Proceedings - UKSim 15th International Conference on Computer Modelling and Simulation, UKSim 2013. p. 84-89 6 p. 6527395

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

2012

Binary image representation by contour trees

Aydogan, D. B. & Hyttinen, J., 14 May 2012, Medical Imaging 2012: Image Processing. Vol. 8314. 83142X

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

5 Citations (Scopus)

Direct laser writing and geometrical analysis of scaffolds with designed pore architecture for three-dimensional cell culturing

Käpylä, E., Aydogan, D. B., Virjula, S., Vanhatupa, S., Miettinen, S., Hyttinen, J. & Kellomäki, M., 1 Nov 2012, In : Journal of Micromechanics and Microengineering. 22, 11, 115016.

Research output: Contribution to journalArticleScientificpeer-review

26 Citations (Scopus)
2011

Analysis of biomaterial scaffold fiber thickness for assessing cell attachment

Aydogan, D. B., Hannula, M., Rajala, A., Pälli, A., Haimi, S., Kellomäki, M. & Hyttinen, J., 1 Dec 2011.

Research output: Contribution to conferencePaperScientificpeer-review

Determination of bioceramic filler distribution and porosity of self-reinforced bioabsorbable composites using micro-computed tomography

Niemelä, T., Aydogan, D. B., Hannula, M., Hyttinen, J. & Kellomäki, M., 1 May 2011, In : Composites Part A: Applied Science and Manufacturing. 42, 5, p. 534-542 9 p.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Picosecond laser-induced polymerization of highly porous microscaffolds

Käpylä, E., Aydogan, D. B., Turunen, S., Hyttinen, J. & Kellomäki, M., 1 Dec 2011.

Research output: Contribution to conferencePaperScientificpeer-review

2009

2D texture based classification, segmentation and 3D orientation estimation of tissues using DT-CWT feature extraction methods

Aydogan, D. B., Hannula, M., Arola, T., Dastidar, P. & Hyttinen, J., 1 Dec 2009, In : Data and Knowledge Engineering. 68, 12, p. 1383-1397 15 p.

Research output: Contribution to journalArticleScientificpeer-review

6 Citations (Scopus)

Analysis of multiple resolution μ-CT image sets for pore-size distribution estimation

Aydogan, B., Hannula, M., Moritz, N., Levänen, E. & Hyttinen, J., 1 Dec 2009, World Congress on Medical Physics and Biomedical Engineering: Image Processing, Biosignal Processing, Modelling and Simulation, Biomechanics. 4 ed. Vol. 25. p. 1261-1264 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

1 Citation (Scopus)
2008

Comparison of different structures of silver yarn electrodes for mobile monitoring

Cömert, A., Honkala, M., Aydogan, B., Vehkaoja, A., Verho, J. & Hyttinen, J., 1 Dec 2008, 4th European Conference of the International Federation for Medical and Biological Engineering - ECIFMBE 2008. Vol. 22. p. 1204-1207 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

3 Citations (Scopus)

Comparison of DT-CWT based rotation variant and invariant methods on tissue characterization

Aydogan, B., Hannula, M., Arola, T., Dastidar, P. & Hyttinen, J., 1 Dec 2008, 14th Nordic-Baltic Conference on Biomedical Engineering and Medical Physics, NBC 2008. Vol. 20 IFMBE. p. 473-476 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

System for ECG and heart rate monitoring during group training

Vehkaoja, A., Verho, J., Cömert, A., Aydogan, B., Perhonen, M., Lekkala, J. & Halttunen, J., 1 Dec 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. p. 4832-4835 4 p. 4650295

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

6 Citations (Scopus)

Texture based classification and segmentation of tissues using DT-CWT feature extraction methods

Aydogan, D. B., Hannula, M., Arola, T., Hyttinen, J. & Dastidar, P., 22 Sep 2008, Proceedings of the 21st IEEE International Symposium on Computer-Based Medical Systems, CBMS 2008. p. 614-619 6 p. 4562069

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

5 Citations (Scopus)