Dogu Baran Aydogan

Postdoctoral Researcher

Research outputs

  1. 2019
  2. Published

    Limits to anatomical accuracy of diffusion tractography using modern approaches

    Schilling, K. G., Nath, V., Hansen, C., Parvathaneni, P., Blaber, J., Gao, Y., Neher, P., Aydogan, D. B., Shi, Y., Ocampo-Pineda, M. & 32 othersSchiavi, S., Daducci, A., Girard, G., Barakovic, M., Rafael-Patino, J., Romascano, D., Rensonnet, G., Pizzolato, M., Bates, A., Fischi, E., Thiran, J. P., Canales-Rodríguez, E. J., Huang, C., Zhu, H., Zhong, L., Cabeen, R., Toga, A. W., Rheault, F., Theaud, G., Houde, J. C., Sidhu, J., Chamberland, M., Westin, C. F., Dyrby, T. B., Verma, R., Rathi, Y., Irfanoglu, M. O., Thomas, C., Pierpaoli, C., Descoteaux, M., Anderson, A. W. & Landman, B. A., 15 Jan 2019, In : NeuroImage. 185, p. 1-11 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2018
  4. Published

    Modeling topographic regularity in structural brain connectivity with application to tractogram filtering

    Wang, J., Aydogan, D. B., Varma, R., Toga, A. W. & Shi, Y., 1 Dec 2018, In : NeuroImage. 183, p. 87-98 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Tracking and validation techniques for topographically organized tractography

    Aydogan, D. B. & Shi, Y., 1 Nov 2018, In : NeuroImage. 181, p. 64-84 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity

    Aydogan, D. B., Jacobs, R., Dulawa, S., Thompson, S. L., Francois, M. C., Toga, A. W., Dong, H., Knowles, J. A. & Shi, Y., 1 Jul 2018, In : Brain Structure and Function. 223, 6, p. 2841-2858 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. 2017
  8. Published

    Topographic regularity for tract filtering in brain connectivity

    Wang, J., Aydogan, D. B., Varma, R., Toga, A. W. & Shi, Y., 1 Jan 2017, Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Proceedings. Springer Verlag, p. 263-274 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10265 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  9. 2016
  10. Published

    Probabilistic tractography for topographically organized connectomes

    Aydogan, D. B. & Shi, Y., 1 Jan 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings. Springer Verlag, p. 201-209 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9900 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  11. 2015
  12. Published

    Track filtering via iterative correction of TDI topology

    Aydogan, D. B. & Shi, Y., 1 Jan 2015, Medical Image Computing and Computer Assisted Intervention – MICCAI 2018: 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings. Springer Verlag, p. 20-27 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9349).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  13. 2014
  14. Published

    Direct laser writing of synthetic poly(amino acid) hydrogels and poly(ethylene glycol) diacrylates by two-photon polymerization

    Käpylä, E., Sedlačík, T., Aydogan, D. B., Viitanen, J., Rypáček, F. & Kellomäki, M., 1 Oct 2014, In : Materials Science and Engineering C. 43, p. 280-289 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Characterization of microstructures using contour tree connectivity for fluid flow analysis

    Aydogan, D. B. & Hyttinen, J., 6 Jun 2014, In : Journal of the Royal Society Interface. 11, 95, 20131042.

    Research output: Contribution to journalArticleScientificpeer-review

  16. 2013
  17. Published

    Contour tree connectivity of binary images from algebraic graph theory

    Aydogan, D. B. & Hyttinen, J., 1 Dec 2013, 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings. p. 3054-3058 5 p. 6738629

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  18. Published

    Analysis of trabecular bone microstructure using contour tree connectivity

    Aydogan, D. B., Moritz, N., Aro, H. T. & Hyttinen, J., 24 Oct 2013, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2013 - 16th International Conference, Proceedings. PART 2 ed. p. 428-435 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8150 LNCS, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  19. Published

    Simulation of microporous architecture's effects on fluid flow characteristics in cell seeding

    Bonabi, A., Aydogan, D. B. & Hyttinen, J., 5 Aug 2013, Proceedings - UKSim 15th International Conference on Computer Modelling and Simulation, UKSim 2013. p. 84-89 6 p. 6527395

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  20. 2012
  21. Published

    Direct laser writing and geometrical analysis of scaffolds with designed pore architecture for three-dimensional cell culturing

    Käpylä, E., Aydogan, D. B., Virjula, S., Vanhatupa, S., Miettinen, S., Hyttinen, J. & Kellomäki, M., 1 Nov 2012, In : Journal of Micromechanics and Microengineering. 22, 11, 115016.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Binary image representation by contour trees

    Aydogan, D. B. & Hyttinen, J., 14 May 2012, Medical Imaging 2012: Image Processing. Vol. 8314. 83142X

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  23. 2011
  24. Published

    Analysis of biomaterial scaffold fiber thickness for assessing cell attachment

    Aydogan, D. B., Hannula, M., Rajala, A., Pälli, A., Haimi, S., Kellomäki, M. & Hyttinen, J., 1 Dec 2011.

    Research output: Contribution to conferencePaperScientificpeer-review

  25. Published

    Picosecond laser-induced polymerization of highly porous microscaffolds

    Käpylä, E., Aydogan, D. B., Turunen, S., Hyttinen, J. & Kellomäki, M., 1 Dec 2011.

    Research output: Contribution to conferencePaperScientificpeer-review

  26. Published

    Determination of bioceramic filler distribution and porosity of self-reinforced bioabsorbable composites using micro-computed tomography

    Niemelä, T., Aydogan, D. B., Hannula, M., Hyttinen, J. & Kellomäki, M., 1 May 2011, In : Composites Part A: Applied Science and Manufacturing. 42, 5, p. 534-542 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. 2009
  28. Published

    2D texture based classification, segmentation and 3D orientation estimation of tissues using DT-CWT feature extraction methods

    Aydogan, D. B., Hannula, M., Arola, T., Dastidar, P. & Hyttinen, J., 1 Dec 2009, In : Data and Knowledge Engineering. 68, 12, p. 1383-1397 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Analysis of multiple resolution μ-CT image sets for pore-size distribution estimation

    Aydogan, B., Hannula, M., Moritz, N., Levänen, E. & Hyttinen, J., 1 Dec 2009, World Congress on Medical Physics and Biomedical Engineering: Image Processing, Biosignal Processing, Modelling and Simulation, Biomechanics. 4 ed. Vol. 25. p. 1261-1264 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  30. 2008
  31. Published

    Comparison of different structures of silver yarn electrodes for mobile monitoring

    Cömert, A., Honkala, M., Aydogan, B., Vehkaoja, A., Verho, J. & Hyttinen, J., 1 Dec 2008, 4th European Conference of the International Federation for Medical and Biological Engineering - ECIFMBE 2008. Vol. 22. p. 1204-1207 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  32. Published

    Comparison of DT-CWT based rotation variant and invariant methods on tissue characterization

    Aydogan, B., Hannula, M., Arola, T., Dastidar, P. & Hyttinen, J., 1 Dec 2008, 14th Nordic-Baltic Conference on Biomedical Engineering and Medical Physics, NBC 2008. Vol. 20 IFMBE. p. 473-476 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  33. Published

    System for ECG and heart rate monitoring during group training

    Vehkaoja, A., Verho, J., Cömert, A., Aydogan, B., Perhonen, M., Lekkala, J. & Halttunen, J., 1 Dec 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. p. 4832-4835 4 p. 4650295

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  34. Published

    Texture based classification and segmentation of tissues using DT-CWT feature extraction methods

    Aydogan, D. B., Hannula, M., Arola, T., Hyttinen, J. & Dastidar, P., 22 Sep 2008, Proceedings of the 21st IEEE International Symposium on Computer-Based Medical Systems, CBMS 2008. p. 614-619 6 p. 4562069

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

ID: 26721058