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Research Output

  • 4 Article
  • 3 Conference contribution
  • 1 Chapter
  • 1 Doctoral Thesis
2018

Algorithmic Design of Biomolecular Nanostructures

Mohammed, A., 2018, Aalto University. 168 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Algorithmic design of cotranscriptionally folding 2D RNA origami structures

Mohammed, A., Orponen, P. & Pai, S., 31 May 2018, Unconventional Computation and Natural Computation: 17th International Conference, UCNC 2018, Fontainebleau, France, June 25-29, 2018, Proceedings. Stepney, S. & Verlan, S. (eds.). p. 159-172 (Lecture Notes in Computer Science; vol. 10867).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
File
142 Downloads (Pure)

Effects of design choices on the stiffness of wireframe DNA origami structures

Benson, E., Mohammed, A., Rayneau-Kirkhope, D., Gådin, A., Orponen, P. & Högberg, B., 25 Sep 2018, In : ACS Nano. 12, 9, p. 9291-9299 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
10 Citations (Scopus)
145 Downloads (Pure)
2017

Computational modelling of the kinetic Tile Assembly Model using a rule-based approach

Mohammed, A., Czeizler, E. & Czeizler, E., Nov 2017, In : Theoretical Computer Science. 701, p. 203-215

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
2 Citations (Scopus)
40 Downloads (Pure)

Unknotted strand routings of triangulated meshes

Mohammed, A. & Hajij, M., 2017, DNA Computing and Molecular Programming: 23rd International Conference, DNA 23, Austin, TX, USA, September 24–28, 2017, Proceedings. Brijder, R. & Qian, L. (eds.). p. 46-63 ( Lecture Notes in Computer Science; vol. 10467).

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

Open Access
File
2 Citations (Scopus)
155 Downloads (Pure)
2016

Computer-aided production of scaffolded DNA nanostructures from flat sheet meshes

Benson, E., Mohammed, A., Bosco, A., Teixeira, A. I., Orponen, P. & Högberg, B., 2016, In : Angewandte Chemie. 55, 31, p. 8869-8872 4 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
21 Citations (Scopus)
148 Downloads (Pure)
2015

DNA rendering of polyhedral meshes at the nanoscale

Benson, E., Mohammed, A., Gardell, J., Masich, S., Czeizler, E., Orponen, P. & Högberg, B., 2015, In : Nature. 523, 7561, p. 441-444

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
273 Citations (Scopus)
869 Downloads (Pure)
2013

Rule-based modelling as a platform for the analysis of synthetic self-assembled nano-systems

Mohammed, A. & Czeizler, E., 2013, Proceedings Fourth International Workshop on Computational Models for Cell Processes (Turku, Finland, June 2013). Petre, I. (ed.). Ausralia: Open Publishing Association

Research output: Chapter in Book/Report/Conference proceedingChapterScientific

2012

Computational Modelling of the kinetic Tile Assembly Model using a rule-based approach

Mohammed, A., Pletea, D. & Czeizler, E., 2012, DNA Computing and Molecular Programming - 18th International Conference, Aarhus, Denmark, August 14-17, 2012. p. 36

Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific