Research output per year
Research output per year
Personal profile
Artistic and research interests
I am a postdoctoral researcher at Aalto University School of Science, working under Professor Pekka Orponen in the Natural Computation Group. I am interested in algorithms, combinatorics, topology and their applications. My present focus is on the application of topological graph-theoretic techniques for the design of self-assembled nucleic acid nanostructures.
Education/Academic qualification
Master of Science, Computer Science and Engineering, Aalto-yliopisto
Award Date: 12 Mar 2014
Keywords
- Algorithms
- Combinatorics
- Nucleic acid nanotechnology
- Self assembly
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Network
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Algorithmic Design of Biomolecular Nanostructures
Mohammed, A., 2018, Aalto University. 168 p.Research output: Thesis › Doctoral Thesis › Collection of Articles
Open Access -
Algorithmic design of cotranscriptionally folding 2D RNA origami structures
Mohammed, A., Orponen, P. & Pai, S., 31 May 2018, Unconventional Computation and Natural Computation: 17th International Conference, UCNC 2018, Fontainebleau, France, June 25-29, 2018, Proceedings. Stepney, S. & Verlan, S. (eds.). p. 159-172 (Lecture Notes in Computer Science; vol. 10867).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile179 Downloads (Pure) -
Effects of design choices on the stiffness of wireframe DNA origami structures
Benson, E., Mohammed, A., Rayneau-Kirkhope, D., Gådin, A., Orponen, P. & Högberg, B., 25 Sep 2018, In: ACS Nano. 12, 9, p. 9291-9299 9 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile18 Citations (Scopus)205 Downloads (Pure) -
Computational modelling of the kinetic Tile Assembly Model using a rule-based approach
Mohammed, A., Czeizler, E. & Czeizler, E., Nov 2017, In: Theoretical Computer Science. 701, p. 203-215Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile5 Citations (Scopus)88 Downloads (Pure) -
Unknotted strand routings of triangulated meshes
Mohammed, A. & Hajij, M., 2017, DNA Computing and Molecular Programming: 23rd International Conference, DNA 23, Austin, TX, USA, September 24–28, 2017, Proceedings. Brijder, R. & Qian, L. (eds.). p. 46-63 ( Lecture Notes in Computer Science; vol. 10467).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review
Open AccessFile3 Citations (Scopus)172 Downloads (Pure)
Projects
- 1 Finished
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ALBION: Algorithmic Designs for Biomolecular Nanostructures (ALBION)
Mohammed, A., Orponen, P., Saman Booy, M., Lohikko, A., Elonen, A., Korpela, D., Gautam, V., Hiitola, E. & Vo, T.
01/09/2017 → 31/08/2021
Project: Academy of Finland: Other research funding
Prizes
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Best Paper Award, UCNC 2018
Mohammed, Abdulmelik (Recipient), Orponen, Pekka (Recipient) & Pai, S. (Recipient), 28 Jun 2018
Prize: Award or honor granted for a specific work
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Algorithmic design of 3D wireframe RNA polyhedra
Abdulmelik Mohammed (Speaker)
8 Oct 2018 → 12 Oct 2018Activity: Talk or presentation types › Conference presentation
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University of South Florida
Abdulmelik Mohammed (Visiting researcher)
29 Sep 2017 → 6 Oct 2017Activity: Visiting an external institution types › Visit abroad
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The University of Electro-Communications
Abdulmelik Mohammed (Visiting researcher)
6 Feb 2017 → 24 Feb 2017Activity: Visiting an external institution types › Visit abroad
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Aarhus University
Abdulmelik Mohammed (Visiting researcher)
30 Aug 2017 → 1 Sep 2017Activity: Visiting an external institution types › Visit abroad
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Technical University of Munich
Abdulmelik Mohammed (Visiting researcher)
26 Jun 2017 → 30 Jun 2017Activity: Visiting an external institution types › Visit abroad