Abdulmelik Mohammed

Personal profile

Artistic and research interests

I am a postdoctoral researcher at Aalto University School of Science, working under Professor Pekka Orponen in the Natural Computation Group. I am interested in algorithms, combinatorics, topology and their applications. My present focus is on the application of topological graph-theoretic techniques for the design of self-assembled nucleic acid nanostructures.

Education/Academic qualification

Master of Science (Technology), Information Technology

Keywords

Algorithms
Combinatorics
Nucleic acid nanotechnology
Self assembly

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Research Output

4 Article
3 Conference contribution
1 Chapter
1 Doctoral Thesis

Algorithmic Design of Biomolecular Nanostructures

Mohammed, A., 2018, Aalto University. 168 p.

Research output: Thesis › Doctoral Thesis › Collection of Articles

Open Access

Algorithmic design of cotranscriptionally folding 2D RNA origami structures

Mohammed, A., Orponen, P. & Pai, S., 31 May 2018, Unconventional Computation and Natural Computation: 17th International Conference, UCNC 2018, Fontainebleau, France, June 25-29, 2018, Proceedings. Stepney, S. & Verlan, S. (eds.). p. 159-172 (Lecture Notes in Computer Science; vol. 10867).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

Open Access

File

135 Downloads (Pure)

Effects of design choices on the stiffness of wireframe DNA origami structures

Benson, E., Mohammed, A., Rayneau-Kirkhope, D., Gådin, A., Orponen, P. & Högberg, B., 25 Sep 2018, In : ACS Nano. 12, 9, p. 9291-9299 9 p.

Research output: Contribution to journal › Article › Scientific › peer-review

Open Access

File

9 Citations (Scopus)

138 Downloads (Pure)

Computational modelling of the kinetic Tile Assembly Model using a rule-based approach

Mohammed, A., Czeizler, E. & Czeizler, E., Nov 2017, In : Theoretical Computer Science. 701, p. 203-215

Research output: Contribution to journal › Article › Scientific › peer-review

Open Access

File

2 Citations (Scopus)

33 Downloads (Pure)

Unknotted strand routings of triangulated meshes

Mohammed, A. & Hajij, M., 2017, DNA Computing and Molecular Programming: 23rd International Conference, DNA 23, Austin, TX, USA, September 24–28, 2017, Proceedings. Brijder, R. & Qian, L. (eds.). p. 46-63 ( Lecture Notes in Computer Science; vol. 10467).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Scientific › peer-review

Open Access

File