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Personal profile

Artistic and research interests

I am a postdoctoral researcher at Aalto University School of Science, working under Professor Pekka Orponen in the Natural Computation Group. I am interested in algorithms, combinatorics, topology and their applications. My present focus is on the application of topological graph-theoretic techniques for the design of self-assembled nucleic acid nanostructures.

Education/Academic qualification

Master of Science (Technology), Information Technology

Keywords

  • Algorithms
  • Combinatorics
  • Nucleic acid nanotechnology
  • Self assembly

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Research Output

  • 4 Article
  • 3 Conference contribution
  • 1 Chapter
  • 1 Doctoral Thesis

Algorithmic Design of Biomolecular Nanostructures

Mohammed, A., 2018, Aalto University. 168 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access
  • Algorithmic design of cotranscriptionally folding 2D RNA origami structures

    Mohammed, A., Orponen, P. & Pai, S., 31 May 2018, Unconventional Computation and Natural Computation: 17th International Conference, UCNC 2018, Fontainebleau, France, June 25-29, 2018, Proceedings. Stepney, S. & Verlan, S. (eds.). p. 159-172 (Lecture Notes in Computer Science; vol. 10867).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

    Open Access
    File
  • 135 Downloads (Pure)

    Effects of design choices on the stiffness of wireframe DNA origami structures

    Benson, E., Mohammed, A., Rayneau-Kirkhope, D., Gådin, A., Orponen, P. & Högberg, B., 25 Sep 2018, In : ACS Nano. 12, 9, p. 9291-9299 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

    Open Access
    File
  • 9 Citations (Scopus)
    138 Downloads (Pure)

    Computational modelling of the kinetic Tile Assembly Model using a rule-based approach

    Mohammed, A., Czeizler, E. & Czeizler, E., Nov 2017, In : Theoretical Computer Science. 701, p. 203-215

    Research output: Contribution to journalArticleScientificpeer-review

    Open Access
    File
  • 2 Citations (Scopus)
    33 Downloads (Pure)

    Unknotted strand routings of triangulated meshes

    Mohammed, A. & Hajij, M., 2017, DNA Computing and Molecular Programming: 23rd International Conference, DNA 23, Austin, TX, USA, September 24–28, 2017, Proceedings. Brijder, R. & Qian, L. (eds.). p. 46-63 ( Lecture Notes in Computer Science; vol. 10467).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

    Open Access
    File
  • 2 Citations (Scopus)
    148 Downloads (Pure)

    Projects

    ALBION: Algorithmic Designs for Biomolecular Nanostructures (ALBION)

    Mohammed, A., Orponen, P., Saman Booy, M., Vo, T., Lohikko, A., Elonen, A. & Korpela, D.

    01/09/201731/08/2021

    Project: Academy of Finland: Other research funding

    Prizes

    Best Paper Award, UCNC 2018

    Abdulmelik Mohammed (Recipient), Pekka Orponen (Recipient) & Sachith Pai (Recipient), 28 Jun 2018

    Prize: Award or honor granted for a specific work

    Activities

    • 9 Visit abroad
    • 1 Conference presentation

    Algorithmic design of 3D wireframe RNA polyhedra

    Abdulmelik Mohammed (Speaker)
    8 Oct 201812 Oct 2018

    Activity: Talk or presentation typesConference presentation

    The University of Electro-Communications

    Abdulmelik Mohammed (Visiting researcher)
    6 Feb 201724 Feb 2017

    Activity: Visiting an external institution typesVisit abroad

    University of South Florida

    Abdulmelik Mohammed (Visiting researcher)
    29 Sep 20176 Oct 2017

    Activity: Visiting an external institution typesVisit abroad

    Technical University of Munich

    Abdulmelik Mohammed (Visiting researcher)
    26 Jun 201730 Jun 2017

    Activity: Visiting an external institution typesVisit abroad

    Aarhus University

    Abdulmelik Mohammed (Visiting researcher)
    30 Aug 20171 Sep 2017

    Activity: Visiting an external institution typesVisit abroad