Professorship Orponen P.

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  • 2024

    A General Design Method for Scaffold-Free DNA Wireframe Nanostructures

    Elonen, A., Mohammed, A. & Orponen, P., 2024, Unconventional Computation and Natural Computation - 21st International Conference, UCNC 2024, Proceedings. Cho, D.-J. & Kim, J. (eds.). Springer, p. 178-189 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14776 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

  • Automated Rendering of Multi-stranded DNA Complexes with Pseudoknots

    Nowicka, M., Gautam, V. K. & Orponen, P., 2024, Unconventional Computation and Natural Computation - 21st International Conference, UCNC 2024, Proceedings. Cho, D.-J. & Kim, J. (eds.). Springer, p. 190-202 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14776 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

  • Designing 3D RNA Origami Nanostructures with a Minimum Number of Kissing Loops

    Elonen, A. & Orponen, P., Sept 2024, 30th International Conference on DNA Computing and Molecular Programming, DNA 30 2024. Seki, S. & Stewart, J. M. (eds.). Schloss Dagstuhl - Leibniz-Zentrum für Informatik, p. 1-12 12 p. 4. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 314).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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  • Towards Understanding Waiting in Video Games

    Tepponen, N., Bhatnagar, P. & Hämäläinen, P., 14 Oct 2024, CHI-PLAY Companion 2024 - Companion Proceedings of the Annual Symposium on Computer-Human Interaction in Play. ACM, p. 263-268

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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  • Understanding the Design of Emotionally Impactful Game Feel

    Bhatnagar, P., Laattala, M., Dutta, S. & Hämäläinen, P., 14 Oct 2024, CHI-PLAY Companion 2024 - Companion Proceedings of the Annual Symposium on Computer-Human Interaction in Play. ACM, p. 24-30

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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  • 2022

    Limits of Multilayer Diffusion Network Inference in Social Media Research

    Xia, Y., Chen, T. & Kivelä, M., 31 May 2022, Proceedings of the International AAAI Conference on Web and Social Media. AAAI Press, p. 1145-1156 12 p. (Proceedings of the International AAAI Conference on Web and Social Media).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    Open Access
  • 2021

    Longitudinal Variational Autoencoder

    Ramchandran, S., Tikhonov, G., Kujanpaa, K., Koskinen, M. & Lahdesmaki, H., 2021, 24TH INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE AND STATISTICS (AISTATS). Banerjee, A. & Fukumizu, K. (eds.). Microtome Publishing, 11 p. (Proceedings of Machine Learning Research; vol. 130).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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  • 2020

    HAL: Improved Text-­Image Matching by Mitigating Visual Semantic Hubs

    Liu, F., Ye, R., Wang, X. & Li, S., 2020, The Thirty-Fourth AAAI Conference on Artificial Intelligence (AAAI-20). AAAI Press

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    Open Access

  • Leak-Resistant Design of DNA Strand Displacement Systems

    Gautam, V., 2020, Bio-inspired Information and Communication Technologies - 12th EAI International Conference, BICT 2020, Proceedings. Chen, Y., Nakano, T., Lin, L., Mahfuz, M. U. & Guo, W. (eds.). Springer, p. 80-96 17 p. (Lecture Notes of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering, LNICST; vol. 329 LNICST).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    118 Downloads (Pure)

  • RuleDSD: A rule-based modelling and simulation tool for DNA strand displacement systems

    Gautam, V., Long, S. & Orponen, P., 2020, Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies: Volume 3 BIOINFORMATICS. De Maria, E., Fred, A. & Gamboa, H. (eds.). SciTePress, p. 158-167 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    139 Downloads (Pure)
  • 2019

    A strong and robust baseline for text-image matching

    Liu, F. & Ye, R., 2019, ACL 2019 - 57th Annual Meeting of the Association for Computational Linguistics, Proceedings of the Student Research Workshop. Association for Computational Linguistics, p. 169-176 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    Open Access
    9 Citations (Scopus)
  • 2018

    Algorithmic design of cotranscriptionally folding 2D RNA origami structures

    Mohammed, A., Orponen, P. & Pai, S., 31 May 2018, Unconventional Computation and Natural Computation: 17th International Conference, UCNC 2018, Fontainebleau, France, June 25-29, 2018, Proceedings. Stepney, S. & Verlan, S. (eds.). Springer, p. 159-172 (Lecture Notes in Computer Science; vol. 10867).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    3 Citations (Scopus)
    257 Downloads (Pure)
  • 2017

    Unknotted strand routings of triangulated meshes

    Mohammed, A. & Hajij, M., 2017, DNA Computing and Molecular Programming: 23rd International Conference, DNA 23, Austin, TX, USA, September 24–28, 2017, Proceedings. Brijder, R. & Qian, L. (eds.). Springer, p. 46-63 ( Lecture Notes in Computer Science; vol. 10467).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    3 Citations (Scopus)
    256 Downloads (Pure)
  • 2016

    Programming biomolecules that fold greedily during transcription

    Geary, C., Meunier, P.-É., Schabanel, N. & Seki, S., 2016, 41st International Symposium on Mathematical Foundations of Computer Science, MFCS 2016, August 22-26, 2016 - Kraków, Poland. Faliszewski, P., Muscholl, A. & Niedermaier, R. (eds.). Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik, p. 1-14 14 p. 43. (LIPIcs - Leibniz International Proceedings in Informatics; vol. 58).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    24 Citations (Scopus)
    68 Downloads (Pure)
  • 2015

    An Excursion Through Quantitative Model Refinement

    Azimi, S., Czeizler, E., Gratie, C., Gratie, D.-E., Iancu, B., Ibssa, N., Petre, I., Rogojin, V., Shadbahr, T. & Shokri, F., 2015, 16th International Conference, CMC 2015, Valencia, Spain, August 17-21, 2015. p. 25-47

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

  • Binary pattern tile set synthesis is NP-hard

    Kari, L., Kopecki, S., Meunier, P.-É., Patitz, M. J. & Seki, S., 2015, 42nd International Colloquium on Automata, Languages and Programming, ICALP 2015, Kyoto, Japan, July 6-10, 2015. Springer, p. 1022-1034

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    7 Citations (Scopus)

  • Square-Density Increasing Mappings

    Manea, F. & Seki, S., 2015, 10th International Conference, WORDS 2015, Kiel, Germany, September 14-17, 2015. Springer, p. 160-169

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    11 Citations (Scopus)
  • 2014

    Generalized Lyndon-Schützenberger Equations

    Manea, F., Müller, M., Nowotka, D. & Seki, S., 2014, International Symposium on Mathematical Foundations of Computer Science, Budapest, Hungary, August 25-29, 2014. Springer, p. 402-413

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    5 Citations (Scopus)

  • Operational State Complexity under {P}arikh Equivalence

    Lavado, G. J., Pighizzini, G. & Seki, S., 2014, International Workshop on Descriptional Complexity of Formal Systems, Turku, Finland, August 5-8, 2014. Springer, p. 294-305

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    13 Citations (Scopus)

  • Strong Square Conjecture on Binary Words

    Jonoska, N., Manea, F. & Seki, S., 2014, Conference on Current Trends in Theory and Practice of Computer Science, Novy Smokovec, Slovakia, January 25-30, 2014. Springer, p. 339-350

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    10 Citations (Scopus)
  • 2013

    Yield optimization strategies for DNA staged tile assembly systems

    Czeizler, E. & Orponen, P., 2013, 2nd International Conference on the Theory and Practice of Natural Computing (TPNC 2013), Cáceres, Spain, 3-5 December 2013. Dediu, A.-H., Martin-Vide, C., Truthe, B. & Vega-Rodriguez, M. A. (eds.). Berlin Heidelberg: Springer, p. 31-44 (Lecture Notes in Computer Science; vol. 8273).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    2 Citations (Scopus)
    42 Downloads (Pure)
  • 2012

    Computational Modelling of the kinetic Tile Assembly Model using a rule-based approach

    Mohammed, A., Pletea, D. & Czeizler, E., 2012, DNA Computing and Molecular Programming - 18th International Conference, Aarhus, Denmark, August 14-17, 2012. Springer, p. 36

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific

  • Converting Nondeterministic Automata and Context-Free Grammars into Parikh Equivalent Deterministic Automata

    Lavado, G. J., Pighizzini, G. & Seki, S., 2012, DLT The 16th International Conference on Developments in Language Theory (DLT 2012) DLT, (Taipei, Taiwan, August 14-17, 2012). Springer, p. 284-295

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    3 Citations (Scopus)

  • On the Behavior of Tile Assembly System at High Temperatures

    Seki, S. & Okuno, Y., 2012, CiE Turing Centenary Conference - How the World Computes (CiE 2012) CiE, Cambridge, United Kingdom, June 18-23, 2012. Springer, p. 550-560

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    2 Citations (Scopus)

  • Synthesizing Minimal Tile Sets for Complex Patterns in the Framework of Patterned DNA Self-Assembly

    Czeizler, E. & Popa, A., 2012, DNA Computing and Molecular Programming - 18th International Conference (DNA 18) DNA, Aarhus, Denmark, August 14-17, 2012. Stefanovic, D. & Turberfield, A. J. (eds.). Springer, p. 58-72

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    9 Citations (Scopus)

  • Unordered constraint satisfaction games

    Ahlroth, L. & Orponen, P., 2012, MFCS 37th International Symposium on Mathematical Foundations of Computer Science (MFCS 2012) MFCS, Bratislava, Slovakia, August 27-31, 2012. Rovan, B., Sassone, V. & Widmayer, P. (eds.). Springer, p. 64-75

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    4 Citations (Scopus)
    49 Downloads (Pure)
  • 2011

    Synthesizing minimal tile sets for patterned DNA self-assembly

    Göös, M. & Orponen, P., 2011, The 16th Conference on DNA Computing and Molecular Programming (DNA16) DNA, (Hong Kong, China, June 2010). Sakakibara, Y. & Mi, Y. (eds.). Berlin Heidelberg: Springer, p. 71-82 (Lecture Notes in Computer Science; vol. 6518).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    18 Citations (Scopus)
    32 Downloads (Pure)

  • Synthesizing small and reliable tile sets for patterned DNA self-assembly

    Lempiäinen, T., Czeizler, E. & Orponen, P., 2011, DNA Computing and Molecular Programming - 17 th International Conference, DNA 17, Pasadena, CA, USA, September 19-23, 2011. Proceedings. Cardelli, L. & Shih, W. (eds.). Berlin Heidelberg: Springer, p. 145-159 15 p. (Lecture Notes in Computer Science; vol. 6937).

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    11 Citations (Scopus)
    52 Downloads (Pure)

  • The phosphorylation of the heat shock factor as a modulator for the heat shock response

    Czeizler, E., Rogojin, V. & Petre, I., 2011, CMSB'11 9th International Conference on Computational Methods in Systems Biology Paris, France September 21 - 23, 2011. Fages, F. (ed.). New York: ACM, p. 9-23

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    2 Citations (Scopus)
  • 2008

    Balanced multipath source routing

    Prasad, S., Schumacher, A., Haanpää, H. & Orponen, P., 2008, The 21st International Conference on Information Networking (ICOIN'07). Vazao, T., Freire, M. M. & Chong, I. (eds.). Berlin Heidelberg: Springer, p. 315-324

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    4 Citations (Scopus)
    20 Downloads (Pure)

  • Lifetime maximization in wireless sensor networks by distributed binary search

    Schumacher, A., Orponen, P., Thaler, T. & Haanpää, H., 2008, 5th European Conference on Wireless Sensor Networks, EWSN 2008, Jan 30-Feb 1 2008. Springer, p. 237-252

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    3 Citations (Scopus)
    22 Downloads (Pure)
  • 2007

    Distributed computation of maximum lifetime spanning subgraphs in sensor networks

    Haanpää, H., Schumacher, A., Thaler, T. & Orponen, P., 2007, The 3rd International Conference on Mobile Ad-Hoc and Sensor Networks (MSN'07, Beijing, China, December 2007). Zhang, H., Olariu, S., Cao, J. & Johnson, D. B. (eds.). Berlin Heidelberg: Springer, p. 445-456

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    5 Citations (Scopus)
    43 Downloads (Pure)
  • 2006

    Load balancing by distributed optimisation in ad hoc networks

    Schumacher, A., Haanpää, H., Schaeffer, S. E. & Orponen, P., 2006, Mobile Ad-hoc and Sensor Networks Second International Conference, MSN 2006 Hong Kong, China, December 13-15, 2006. Jiannong Cao, I. S. (ed.). Berlin / Heidelberg: Springer, p. 873-884

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    3 Citations (Scopus)
    50 Downloads (Pure)
  • 2005

    Local clustering of large graphs by approximate Fiedler vectors

    Orponen, P. & Schaeffer, S. E., 2005, 4th International Workshop on Efficient and Experimental Algorithms, Santorini, Kreikka, 10.-13.5.2005. E. Nikoletseas, S. (ed.). Berlin Heidelberg, Saksa: Springer, p. 524-533

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    9 Citations (Scopus)
    47 Downloads (Pure)

  • Threshold behaviour of WalkSAT and focused Metropolis search on random 3-satisfiability

    Seitz, S., Alava, M. & Orponen, P., 2005, 8th International Conference on Theory and Applications of Satisfiability Testing, St. Andrews, Skotlanti, 20.-23.6.2005. Bacchus, F. & Walsh, T. (eds.). Berlin Heidelberg: Springer, p. 475-481

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    5 Citations (Scopus)
    41 Downloads (Pure)
  • 2004

    Balanced data gathering in energy-constrained sensor networks

    Falck, E., Floréen, P., Kaski, P., Kohonen, J. & Orponen, P., 2004, ALGOSENSORS'04, First International Workshop on Algorithmic Aspects of Wireless Sensor Networks, Turku, Suomi, 16.7.2004. Nikoletseas, S. & Rolim, J. D. P. (eds.). Berlin Heidelberg: Springer, p. 59-70

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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  • 2003

    An efficient local search method for random 3-satisfiability

    Seitz, S. & Orponen, P., 2003, IEEE LICS'03 Workshop on Typical Case Complexity and Phase Transitions, Ottawa, Canada, June 2003. Kranakis, E. & Kirousis, L. (eds.). Amsterdam: Elsevier

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

  • Multicast time maximization in energy constrained wireless networks

    Floréen, P., Kaski, P., Kohonen, J. & Orponen, P., 2003, DIALM-POMC '03 Joint Workshop on Foundations of Mobile Computing, San Diego, CA, USA, 19.9.2003. Richa, A. & Welch, J. (eds.). ACM, New York: ACM, p. 50-58

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    49 Citations (Scopus)
    231 Downloads (Pure)
  • 2002

    Computation of the multivariate Oja median

    Ronkainen, T., Oja, H. & Orponen, P., 2002, Developments in robust statistics : International Conference on Robust Statistics ICORS '01, Stift Vorau, Itävalta, heinäkuu 2001. Dutter, R., Filzmoser, P., Gather, U. & Rousseeuw, J. (eds.). Berliini: Physica Verlag, p. 344-359

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    52 Downloads (Pure)
  • 2001

    Computing with continuous-time Liapunov systems

    Síma, J. & Orponen, P., 2001, Proceedings on 33rd Annual ACM Symposium on Theory of Computing, July 6-8, 2001, Heraklion, Crete, Greece. Vitter, J. S., Spirakis, P. G. & Yannakakis, M. (eds.). ACM, p. 722-731 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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  • Exponential transients in continuous-time symmetric Hopfield nets

    Síma, J. & Orponen, P., 2001, Artificial Neural Networks - ICANN 2001, International Conference Vienna, Austria, August 21-25, 2001 Proceedings. Dorffner, G., Bischof, H. & Hornik, K. (eds.). Springer, p. 806-813 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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    2 Downloads (Pure)
  • 1999

    Some afterthoughts on Hopfield networks

    Síma, J., Orponen, P. & Antti-Poika, T., 1999, SOFSEM '99, Theory and Practice of Informatics, 26th Conference on Current Trends in Theory and Practice of Informatics, Milovy, Czech Republic, November 27 - December 4, 1999, Proceedings. Pavelka, J., Tel, G. & Bartosek, M. (eds.). Springer, p. 459-469 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

    Open Access
  • 1997

    A survey of continuous-time computation theory

    Orponen, P., 1997, Advances in Algorithms, Languages, and Complexity - In Honor of Ronald V. Book. Du, D.-Z. & Ko, K.-I. (eds.). Kluwer Academic Publishers, p. 209-224 16 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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  • The computational power of continuous time neural networks

    Orponen, P., 1997, SOFSEM '97: Theory and Practice of Informatics, 24th Seminar on Current Trends in Theory and Practice of Informatics, Milovy, Czech Republic, November 22-29, 1997, Proceedings. Plasil, F. & Jeffrey, K. G. (eds.). Springer, p. 86-103 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

  • 1996

    On the effect of analog noise in discrete-time analog computations

    Maass, W. & Orponen, P., 1996, Advances in Neural Information Processing Systems 9, NIPS, Denver, CO, USA, December 2-5, 1996. Mozer, M., Jordan, M. I. & Petsche, T. (eds.). MIT Press, p. 218-224 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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  • Parallel programming on Hopfield nets

    Orponen, P. & Prost, F., 1996, 7th Finnish Artificial Intelligence Conference, Vaasa, Finland, August 20-23, 1996, Proceedings: STeP'96 - Genes, Nets and Symbols. Alander, J., Honkela, T. & Jakobsson, M. (eds.). Finnish Artificial Intelligence Society, p. 5-12

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific

  • Universal computation by finite two-dimensional coupled map lattices

    Orponen, P. & Matamala, M., 1996, 4th Workshop on Physics and Computation, PhysComp 96, Boston, MA, USA, November 22-24, 1996, Proceedings. Toffoli, T., Biafore, M. & Leão, J. (eds.). Cambridge, MA: New England Complex Systems Institute, p. 243-247

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

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  • 1994

    Random strings make hard instances

    Buhrman, H. & Orponen, P., 1994, Proceedings of the Ninth Annual Structure in Complexity Theory Conference, Amsterdam, The Netherlands, June 28 - July 1, 1994. IEEE, p. 217-222 6 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

  • 1993

    On the computational power of discrete Hopfield nets

    Orponen, P., 1993, Automata, Languages and Programming, 20nd International Colloquium, ICALP93, Lund, Sweden, July 5-9, 1993, Proceedings. Lingas, A., Karlsson, R. G. & Carlsson, S. (eds.). Springer, p. 215-226 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific › peer-review

  • 1992

    Integrating symbolic reasoning with neurally represented background knowledge

    Myllymäki, P., Orponen, P. & Silander, T., 1992, 5th Finnish Artificial Intelligence Conference, Espoo, Finland, June 9-11, 1992, Proceedings: STeP'92 - New Directions in Artificial Intelligence. Hyvönen, E., Seppänen, J. & Syrjänen, M. (eds.). Finnish Artificial Intelligence Society, Vol. 2. p. 231-240

    Research output: Chapter in Book/Report/Conference proceeding › Conference article in proceedings › Scientific