Professorship Lähdesmäki Harri

Lu Cheng
- Professorship Lähdesmäki Harri - Academy Research Fellow
- Department of Computer Science - Academy Research Fellow
Person: Postdoctoral researchers
20142021
Charles Gadd
- Professorship Kaski Samuel - Postdoctoral Researcher
- Professorship Lähdesmäki Harri - Postdoctoral Researcher
Person: Postdoctoral researchers
20172020
Viivi Halla-aho
- Professorship Lähdesmäki Harri - Doctoral Candidate
- School services, SCI
- Department of Computer Science - Doctoral Candidate
Person: Doctoral students, Doctoral studies
20152020

58 Article
19 Conference contribution
3 Meeting Abstract
2 Paper
More

Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis
Plichta, D. R., Somani, J., Pichaud, M., Wallace, Z. S., Fernandes, A. D., Perugino, C. A., Lähdesmäki, H., Stone, J. H., Vlamakis, H., Chung, D. C., Khanna, D., Pillai, S. & Xavier, R. J., Dec 2021, In: GENOME MEDICINE. 13, 1, 35.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
File
5 Downloads (Pure)
Genomic monitoring of SARS-CoV-2 uncovers an Nsp1 deletion variant that modulates type I interferon response
Lin, J., Tang, C., Wei, H., Du, B., Chen, C., Wang, M., Zhou, Y., Yu, M., Cheng, L., Kuivanen, S., Ogando, N. S., Levanov, L., Zhao, Y., Li, C., Zhou, R., Li, Z., Zhang, Y., Sun, K., Wang, C., Chen, L. & 52 others, Xiao, X., Zheng, X., Chen, S., Yang, R., Zhang, D., Xu, M., Song, J., Wang, D., Li, Y., Lei, S., Zeng, W., Yang, Q., He, P., Zhang, Y., Zhou, L., Cao, L., Luo, F., Liu, H., Wang, L., Ye, F., Zhang, M., Li, M., Li, X., Li, K., Ke, B., Xu, J., Yang, H., He, S., Pan, M., Yan, Y., Zha, Y., Jiang, L., Yu, C., Liu, Y., Xu, Z., Li, Q., Jiang, Y., Sun, J., Hong, W., Wei, H., Lu, G., Vapalahti, O., Luo, Y., Wei, Y., Connor, T., Tan, W., Snijder, E. J., Smura, T., Li, W., Geng, J., Ying, B. & Chen, L., 10 Mar 2021, In: CELL HOST AND MICROBE. 29, 3, p. 489-502.e8 22 p.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access
lgpr: an interpretable non-parametric method for inferring covariate effects from longitudinal data
Timonen, J., Mannerström, H., Vehtari, A. & Lähdesmäki, H., 21 Jan 2021, In: Bioinformatics.
Research output: Contribution to journal › Article › Scientific › peer-review

Open Access

Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease
Shaw, K. A. (Contributor), Bertha, M. (Contributor), Hofmekler, T. (Contributor), Chopra, P. (Contributor), Vatanen, T. (Contributor), Srivatsa, A. (Contributor), Prince, J. (Contributor), Kumar, A. (Contributor), Sauer, C. (Contributor), Zwick, M. E. (Contributor), Satten, G. A. (Contributor), Kostic, A. D. (Contributor), Mulle, J. G. (Contributor), Xavier, R. J. (Contributor) & Kugathasan, S. (Contributor), 1 Jan 2016
DOI: 10.6084/m9.figshare.c.3598127.v1, https://figshare.com/collections/Dysbiosis_inflammation_and_response_to_treatment_a_longitudinal_study_of_pediatric_subjects_with_newly_diagnosed_inflammatory_bowel_disease/3598127/1
Dataset
The influence of a short-term gluten-free diet on the human gut microbiome
Bonder, M. J. (Creator), Tigchelaar, E. F. (Contributor), Cai, X. (Contributor), Trynka, G. (Contributor), Cenit, M. C. (Contributor), Hrdlickova, B. (Contributor), Zhong, H. (Contributor), Vatanen, T. (Contributor), Gevers, D. (Contributor), Wijmenga, C. (Contributor), Wang, Y. (Contributor) & Zhernakova, A. (Contributor), 1 Jan 2016
DOI: 10.6084/m9.figshare.c.3598283.v1, https://figshare.com/collections/The_influence_of_a_short-term_gluten-free_diet_on_the_human_gut_microbiome/3598283/1
Dataset
Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data
Intosalmi, J. (Contributor), Ahlfors, H. (Contributor), Rautio, S. (Contributor), Mannerström, H. (Creator), Chen, Z. (Contributor), Lahesmaa, R. (Contributor), Stockinger, B. (Contributor) & Lähdesmäki, H. (Contributor), 1 Jan 2015
DOI: 10.6084/m9.figshare.c.3612158.v1, https://figshare.com/collections/Analyzing_Th17_cell_differentiation_dynamics_using_a_novel_integrative_modeling_framework_for_time-course_RNA_sequencing_data/3612158/1
Dataset

9 Conference presentation
3 Visit abroad
2 Participant of a conference, workshop, session or tutorial
2 Reviewer of scientific journal
More
- 2 Public or invited talk

International Conference on Machine Learning
Maria Osmala (Member)
12 Jul 2020 → 18 Jul 2020
Activity: Participating in or organising an event types › Participant of a conference, workshop, session or tutorial
Faster Bayesian inference in Joint Species Distribution Models
Gleb Tikhonov (Speaker), Jarno Vanhatalo (Contributor), Otso Ovaskainen (Contributor) & Harri Lähdesmäki (Contributor)
22 Jun 2020 → 26 Jun 2020
Activity: Talk or presentation types › Conference presentation
IEEE Access (Journal)
Juho Timonen (Reviewer)
28 Sep 2020
Activity: Publication peer-review and editorial work types › Reviewer of scientific journal

Biologisten mekanismien alkulähteillä
Harri Lähdesmäki
16/05/2019
1 item of Media coverage
Press/Media: Media appearance
Aalto University team wins AI research award
Markus Heinonen & Samuel Kaski
24/04/2019
1 item of Media coverage
Press/Media: Media appearance
snpEnrichR: analyzing co-localization of SNPs and their proxies in genomic regions
Kari Nousiainen
07/06/2018
1 item of Media coverage
Press/Media: Media appearance

Professorship Lähdesmäki Harri

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Dive into details

Lu Cheng

Charles Gadd

Viivi Halla-aho

Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis

Genomic monitoring of SARS-CoV-2 uncovers an Nsp1 deletion variant that modulates type I interferon response

lgpr: an interpretable non-parametric method for inferring covariate effects from longitudinal data

Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

The influence of a short-term gluten-free diet on the human gut microbiome

Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data

International Conference on Machine Learning

Faster Bayesian inference in Joint Species Distribution Models

IEEE Access (Journal)

Biologisten mekanismien alkulähteillä

Aalto University team wins AI research award

snpEnrichR: analyzing co-localization of SNPs and their proxies in genomic regions