Research Output

2020

Investigating the role of ERAD on antibody processing in glycoengineered Saccharomyces cerevisiae

Piirainen, M. A. & Frey, A. D., 1 Feb 2020, In : FEMS YEAST RESEARCH. 20, 1

Research output: Contribution to journalArticleScientificpeer-review

Mining Data From Plasma Cell Differentiation Identified Novel Genes for Engineering of a Yeast Antibody Factory

Koskela, E. V., Gonzalez Salcedo, A., Piirainen, M. A., Iivonen, H. A., Salminen, H. & Frey, A. D., 31 Mar 2020, In : FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY. 8, 255.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
8 Downloads (Pure)
2019

Biocatalytic Production of Amino Carbohydrates through Oxidoreductase and Transaminase Cascades

Aumala, V., Mollerup, F., Jurak, E., Blume, F., Karppi, J., Koistinen, A. E., Schuiten, E., Voß, M., Bornscheuer, U., Deska, J. & Master, E. R., 1 Jan 2019, In : ChemSusChem.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
2 Citations (Scopus)
155 Downloads (Pure)

Broadly applicable genetic tools for fungi

Rantasalo, A., 2019, Aalto University. 274 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Effect of in-situ hydrogen forming reagents on hydrothermolysis of organosolv lignin

Hashmi, F., Pitkänen, L., Usvalampi, A., Ruuttunen, K. & Sixta, H., 2019.

Research output: Contribution to conferencePaperScientific

Elucidating flavour formation and stress tolerance in brewing yeast hybrids

Krogerus, K., 2019, Aalto University. 212 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Physiology of aquatic microorganisms from the perspective of bioprocess development

Wang, Y., 2019, Aalto University. 116 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Production and characterization of Aspergillus niger GH29 family α-fucosidase and production of a novel non-reducing 1-fucosyllactose

Usvalampi, A., Ruvalcaba Medrano, M., Maaheimo, H., Salminen, H., Tossavainen, O. & Frey, A. D., 1 Jan 2019, In : Glycoconjugate Journal.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Tailoring N-Glycan Biosynthesis for Production of Therapeutic Proteins in Saccharomyces cerevisiae

Piirainen, M. A., Salminen, H. & Frey, A. D., 1 Jan 2019, In : Methods in molecular biology (Clifton, N.J.). 1923, p. 227-241 15 p.

Research output: Contribution to journalArticleScientificpeer-review

2018

A novel acetyl xylan esterase enabling complete deacetylation of substituted xylans

Razeq, F. M., Jurak, E., Stogios, P. J., Yan, R., Tenkanen, M., Kabel, M. A., Wang, W. & Master, E. R., Mar 2018, In : Biotechnology for Biofuels. 11, 1, 12 p., 74.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
11 Citations (Scopus)
106 Downloads (Pure)

Chemo-enzymatic Synthesis of Clickable Xylo-oligosaccharide Monomers from Hardwood 4-O-Methylglucuronoxylan

Maccormick, B., Vuong, T. V. & Master, E. R., 12 Feb 2018, In : Biomacromolecules. 19, 2, p. 521-530 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
6 Citations (Scopus)
126 Downloads (Pure)

Constructing arabinofuranosidases for dual arabinoxylan debranching activity

Wang, W., Andric, N., Sarch, C., Silva, B. T., Tenkanen, M. & Master, E. R., Jan 2018, In : Biotechnology and Bioengineering. 115, 1, p. 41-49

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
3 Citations (Scopus)
123 Downloads (Pure)

Differential evolution of Strecker and non-Strecker aldehydes during aging of pale and dark beers

Gibson, B., Aumala, V., Heiniö, R. L., Mikkelson, A. & Honkapää, K., 1 Sep 2018, In : Journal of Cereal Science. 83, p. 130-138 9 p.

Research output: Contribution to journalArticleScientificpeer-review

3 Citations (Scopus)

Direct analysis by time-of-flight secondary ion mass spectrometry reveals action of bacterial laccase-mediator systems on both hardwood and softwood samples

Goacher, R. E., Braham, E. J., Michienzi, C. L., Flick, R. M., Yakunin, A. F. & Master, E. R., Sep 2018, In : Physiologia Plantarum. 164, 1, p. 5-16 12 p.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Dynamics of the Phanerochaete carnosa transcriptome during growth on aspen and spruce

Jurak, E., Suzuki, H., van Erven, G., Gandier, J. A., Wong, P., Chan, K., Ho, C. Y., Gong, Y., Tillier, E., Rosso, M. N., Kabel, M. A., Miyauchi, S. & Master, E. R., 13 Nov 2018, In : BMC GENOMICS. 19, 1, 1 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
3 Citations (Scopus)
166 Downloads (Pure)

Engineering & Discovery of CAZyme AA5_2 Oxidases

Mollerup, F., 2018, Aalto University. 152 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Enzymatic synthesis of fucose-containing galacto-oligosaccharides using β-galactosidase and identification of novel disaccharide structures

Usvalampi, A., Maaheimo, H., Tossavainen, O. & Frey, A. D., Feb 2018, In : Glycoconjugate Journal. 35, 1, p. 31-40 10 p.

Research output: Contribution to journalArticleScientificpeer-review

7 Citations (Scopus)

Inhibitory effects of Scots pine heartwood extractives on enzymatic holocellulose hydrolysis by wood decaying fungi

Belt, T., Mollerup, F., Hänninen, T. & Rautkari, L., Aug 2018, In : International Biodeterioration and Biodegradation. 132, p. 150-156

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Oxidation of hemicellulose derived oligosaccharides with carbohydrate oxidoreductases

Karppi, J., 8 Jul 2018.

Research output: Contribution to conferencePosterScientific

Substrate-specific differential gene expression and RNA editing in the brown rot fungus Fomitopsis pinicola

Wu, B., Gaskell, J., Held, B. W., Toapanta, C., Vuong, T., Ahrendt, S., Lipzen, A., Zhang, J., Schilling, J. S., Master, E., Grigoriev, I. V., Blanchette, R. A., Cullen, D. & Hibbett, D. S., 1 Aug 2018, In : Applied and Environmental Microbiology. 84, 16, 19 p., e00991-18.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
8 Citations (Scopus)
117 Downloads (Pure)

Understanding the metabolic burden of recombinant antibody production in Saccharomyces cerevisiae using a quantitative metabolomics approach

de Ruijter, J. C., Koskela, E. V., Nandania, J., Frey, A. D. & Velagapudi, V., 1 Apr 2018, In : Yeast. 35, 4, p. 331-341 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
10 Citations (Scopus)
125 Downloads (Pure)

Visualizing the effects of non-catalytic proteins on enzyme accessibility using a 3D substrate model

Monschein, M., Leamon, A. K. M. AI. A., Jurak, E., Kataja, K. & Master, E., 29 Aug 2018.

Research output: Contribution to conferencePosterScientificpeer-review

2017

A novel Colletotrichum graminicola raffinose oxidase in the AA5 family

Andberg, M., Mollerup, F., Parikka, K., Koutaniemi, S., Boer, H., Juvonen, M., Master, E., Tenkanen, M. & Kruus, K., 2017, In : Applied and Environmental Microbiology. 83, 20, e01383-17.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
7 Citations (Scopus)
69 Downloads (Pure)

Colorimetric detection of acetyl xylan esterase activities

Mai-Gisondi, G. & Master, E. R., 2017, Protein-Carbohydrate Interactions: Methods and Protocols. Abbott, D. W. & Lammerts van Bueren, A. (eds.). p. 45-57 13 p. (Methods in Molecular Biology; vol. 1588).

Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

1 Citation (Scopus)

Comparative metagenomics of cellulose- and poplar hydrolysate-degrading microcosms from gut microflora of the Canadian Beaver (Castor canadensis) and North American moose (Alces americanus) after long-term enrichment

Wong, M. T., Wang, W., Couturier, M., Razeq, F. M., Lombard, V., Lapebie, P., Edwards, E. A., Terrapon, N., Henrissat, B. & Master, E. R., 20 Dec 2017, In : Frontiers in Microbiology. 8, DEC, 2504.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
5 Citations (Scopus)
157 Downloads (Pure)

Development and Application of Accessory Hemicellulases for the Production of Engineered Polysaccharides

Mai-Gisondi, G., 2017, Aalto University. 172 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Enzymatically Debranched Xylans in Graft Copolymerization

Littunen, K., Mai-Gisondi, G., Seppälä, J. & Master, E. R., 8 May 2017, In : Biomacromolecules. 18, 5, p. 1634-1641 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
3 Citations (Scopus)
111 Downloads (Pure)

Following nature's roadmap: folding factors from plasma cells led to improvements in antibody secretion in S. cerevisiae

Koskela, E. V., de Ruijter, J. C. & Frey, A. D., 1 Aug 2017, In : BIOTECHNOLOGY JOURNAL. 12, 8, 11 p., 1600631.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
5 Citations (Scopus)
90 Downloads (Pure)

Following the blueprint of plasma cells to design a yeast IgG factory

Koskela, E. V., 2017, Aalto University. 196 p.

Research output: ThesisDoctoral ThesisCollection of Articles

Open Access

Functional comparison of versatile carbohydrate esterases from families CE1, CE6 and CE16 on acetyl-4-O-methylglucuronoxylan and acetyl-galactoglucomannan

Mai-Gisondi, G., Maaheimo, H., Chong, S-L., Hinz, S., Tenkanen, M. & Master, E., Sep 2017, In : BIOCHIMICA ET BIOPHYSICA ACTA: GENERAL SUBJECTS. 1861, 9, p. 2398-2405

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
5 Citations (Scopus)
86 Downloads (Pure)

Mass spectrometry as a tool for glycoengineering in yeast

Piirainen, M., Salminen, H. & Frey, A., 2017, p. 1. 1 p.

Research output: Contribution to conferencePosterScientific

Occurrence and function of enzymes for lignocellulose degradation in commercial Agaricus bisporus cultivation

Kabel, M. A., Jurak, E., Mäkelä, M. R. & De Vries, R. P., 2017, In : Applied Microbiology and Biotechnology. 101, 11, p. 4363–4369 7 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
File
20 Citations (Scopus)
118 Downloads (Pure)

Screening for novel genes of Saccharomyces cerevisiae involved in recombinant antibody production.

De Ruijter, J., Jurgens, G. & Frey, A., 2017, In : FEMS YEAST RESEARCH. 17, 1

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
8 Citations (Scopus)
66 Downloads (Pure)

The trans-10,cis-12 conjugated linoleic acid increases triacylglycerol hydrolysis in yeast Saccharomyces cerevisiae

Hokkanen, S., Laakso, S., Senn, C. M. & Frey, A. D., Jul 2017, In : Journal of Applied Microbiology. 123, 1, p. 185-193 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Trans-10, cis-12 Conjugated Linoleic Acid Induces Lipid Degradation and Attenuates Fatty Acid Desaturation in Yeast Saccharomyces cerevisiae

Hokkanen, S., Pastinen, O. & Frey, A., 30 Jan 2017, In : Advances in Biotechnology and Microbiology. 2, 4, p. 1-8 555595.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
109 Downloads (Pure)