Research output per year
Research output per year
- 1 - 50 out of 597 results
Search results
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2025
Active Learning of Molecular Data for Task-Specific Objectives
Ghosh, K., Todorovic, M., Vehtari, A. & Rinke, P., 7 Jan 2025, In: Journal of Chemical Physics. 162, 1, 014103.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile12 Downloads (Pure) -
Advances in projection predictive inference
McLatchie, Y., Rögnvaldsson, S., Weber, F. & Vehtari, A., 2025, In: Statistical Science. 40, 1, p. 128-147 20 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)24 Downloads (Pure) -
Autonomy and Algorithms: Tracing the Significance of Content Personalization
Rydenfelt, H., Lehtiniemi, T., Haapoja, J. & Haapanen, L., 2025, In: International Journal of Communication. 19, p. 481-500 20 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)170 Downloads (Pure) -
Auxiliary MCMC samplers for parallelisable inference in high-dimensional latent dynamical systems
Corenflos, A. & Särkkä, S., 2025, In: Electronic Journal of Statistics. 19, 1, p. 1370-1424 55 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Downloads (Pure) -
Bearing estimation using foghorn sounds
Gorad, A., Zhao, Z., Vallet García, J. M., Lehtola, V., Hammarberg, T., Ramm-Schmidt, H., Islam, S., Thombre, S. & Särkkä, S., 1 Mar 2025, In: Applied Acoustics. 231, 110560.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile11 Downloads (Pure) -
E-GuARD : expert-guided augmentation for the robust detection of compounds interfering with biological assays
Palmacci, V., Nahal, Y., Welsch, M., Engkvist, O., Kaski, S. & Kirchmair, J., Dec 2025, In: Journal of Cheminformatics. 17, 1, p. 1-15 15 p., 64.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile2 Downloads (Pure) -
Enhanced EEG Forecasting: A Probabilistic Deep Learning Approach
Pankka, H., Lehtinen, J., Ilmoniemi, R. & Roine, T., 18 Mar 2025, In: Neural Computation. 37, 4, p. 793-814 22 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)1 Downloads (Pure) -
Enhancing atom mapping with multitask learning and symmetry-aware deep graph matching
Astero, M. & Rousu, J., Dec 2025, In: Journal of Cheminformatics. 17, 1, p. 1-17 17 p., 87.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Downloads (Pure) -
Gaussian multi-target filtering with target dynamics driven by a stochastic differential equation
Garcia-Fernandez, A. F. & Sarkka, S., 2025, In: IEEE Transactions on Signal Processing. 73, p. 664-675 12 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Health octo tool matches personalized health with rate of aging
Salimi, S., Vehtari, A., Salive, M., Kaeberlein, M., Raftery, D. & Ferrucci, L., Dec 2025, In: Nature Communications. 16, 1, p. 1-16 16 p., 4007.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Downloads (Pure) -
Heterogeneous associations between early-life religious upbringing and late-life health : Evidence from a machine learning approach
Zong, X., Meng, X., Silventoinen, K., Nelimarkka, M. & Martikainen, P., Sept 2025, In: SOCIAL SCIENCE AND MEDICINE. 380, p. 1-12 12 p., 118210.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Downloads (Pure) -
Latent mixed-effect models for high-dimensional longitudinal data
Ong, P., Haußmann, M., Lönnroth, O. & Lähdesmäki, H., 24 May 2025, In: Transactions on Machine Learning Research. 2025, May, 30 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile2 Downloads (Pure) -
Misspecification-robust likelihood-free inference in high dimensions
Thomas, O., Sá-Leão, R., de Lencastre, H., Kaski, S., Corander, J. & Pesonen, H., 3 May 2025, (E-pub ahead of print) In: Computational Statistics. 114007.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Molecular property prediction using pretrained-BERT and Bayesian active learning : a data-efficient approach to drug design
Masood, M. A., Kaski, S. & Cui, T., Dec 2025, In: Journal of Cheminformatics. 17, 1, p. 1-15 15 p., 58.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile4 Downloads (Pure) -
Multi-target property prediction and optimization using latent spaces of generative model
Jain, A., Heinonen, M., Käsnänen, H., Sipilä, J. & Kaski, S., 30 Jun 2025, In: Machine Learning: Science and Technology. 6, 2, p. 1-32 32 p., 025042.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Downloads (Pure) -
PARALLEL SQUARE-ROOT STATISTICAL LINEAR REGRESSION FOR INFERENCE IN NONLINEAR STATE SPACE MODELS
Yaghoobi, F., Corenflos, A., Hassan, S. S. & Särkkä, S., 2025, In: SIAM Journal on Scientific Computing. 47, 2, p. B454-B476 23 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access1 Citation (Scopus) -
Parallel state estimation for systems with integrated measurements
Yaghoobi, F. & Särkkä, S., 2025, In: IEEE Signal Processing Letters. 32, p. 371-375 5 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Downloads (Pure) -
Pedestrian crossing decisions can be explained by bounded optimal decision-making under noisy visual perception
Wang, Y., Srinivasan, A. R., Jokinen, J. P. P., Oulasvirta, A. & Markkula, G., Feb 2025, In: Transportation Research Part C: Emerging Technologies. 171, 23 p., 104963.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile26 Downloads (Pure) -
Physics-informed machine learning for grade prediction in froth flotation
Nasiri Abarbekouh, M., Iqbal, S. & Särkkä, S., 15 Jul 2025, In: Minerals Engineering. 227, 12 p., 109297.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)27 Downloads (Pure) -
Provable Quantum Algorithm Advantage for Gaussian Process Quadrature
Galvis-Florez, C. A., Farooq, A. & Särkkä, S., Feb 2025, In: Transactions on Machine Learning Research. 2025-February, p. 1-21 21 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Raw signal segmentation for estimating RNA modification from Nanopore direct RNA sequencing data
Cheng, G., Vehtari, A. & Cheng, L., 6 Mar 2025, (E-pub ahead of print) In: eLife. 24 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Scaling up drug combination surface prediction
Huusari, R., Wang, T., Szedmak, S., Dias, D., Aittokallio, T. & Rousu, J., Mar 2025, In: Briefings in Bioinformatics. 26, 2, p. 1-11 11 p., bbaf099.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile2 Downloads (Pure) -
Single-cell analysis of aplastic anemia reveals a convergence of NK and NK-like CD8+ T cells with a disease-associated TCR signature
Lundgren, S., Huuhtanen, J., Keränen, M., Feng, X., Patel, B. A., Ryland, G. L., Fox, L. C., Bravo-Perez, C., Clemente, M., Kerr, C., Walldin, G., Dufva, O., Zaimoku, Y., Tuononen, T., Myllymäki, M., Ebeling, F., Jokinen, E., Heinonen, M., Kasanen, T. & Klievink, J. & 14 others, , 26 Feb 2025, In: SCIENCE TRANSLATIONAL MEDICINE. 17, 787, p. 1-17 17 p., eadl6758.Research output: Contribution to journal › Article › Scientific › peer-review
1 Citation (Scopus)1 Downloads (Pure) -
The Piranha Problem: Large Effects Swimming in a Small Pond
Tosh, C., Greengard, P., Goodrich, B., Gelman, A., Vehtari, A. & Hsu, D., Jan 2025, In: Notices of the American Mathematical Society. 72, 1, p. 15-25 11 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Understanding visual search in graphical user interfaces
Putkonen, A., Jiang, Y., Zeng, J., Tammilehto, O., Jokinen, J. P. P. & Oulasvirta, A., May 2025, In: International Journal of Human Computer Studies. 199, 15 p., 103483.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile29 Downloads (Pure) -
Video-Language Critic : Transferable Reward Functions for Language-Conditioned Robotics
Alakuijala, M., McLean, R., Woungang, I., Farsad, N., Kaski, S., Marttinen, P. & Yuan, K., 2025, In: Transactions on Machine Learning Research. 2025, p. 1-22 22 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile19 Downloads (Pure) -
2024
A Framework for Improving the Reliability of Black-box Variational Inference
Welandawe, M., Riis Andersen, M., Vehtari, A. & Huggins, J. H., 2024, In: Journal of Machine Learning Research. 25, p. 1−71Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile14 Downloads (Pure) -
Attention-based approach to predict drug–target interactions across seven target superfamilies
Schulman, A., Rousu, J., Aittokallio, T. & Tanoli, Z., 1 Aug 2024, In: Bioinformatics. 40, 8, p. 1-14 14 p., btae496.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile29 Downloads (Pure) -
A virtual anti-scatter grid for multi-energy photon counting detector systems
Purisha, Z., Winkler, A., Emzir, M., Hostettler, R., Luukka, P. & Särkkä, S., 1 Oct 2024, In: Physica Scripta. 99, 10, 14 p., 105287.Research output: Contribution to journal › Article › Scientific › peer-review
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A Workflow for Building Computationally Rational Models of Human Behavior
Chandramouli, S., Shi, D., Putkonen, A., De Peuter, S., Zhang, S., Jokinen, J. P. P., Howes, A. & Oulasvirta, A., Sept 2024, In: Computational Brain and Behavior. 7, 3, p. 399-419 21 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)12 Downloads (Pure) -
Bayesian reduced rank regression models generalizable neural fingerprints that differentiate between individuals in magnetoencephalography data
Haakana, J., Merz, S., Kaski, S., Renvall, H. & Salmelin, R., May 2024, In: European Journal of Neuroscience. 59, 9, p. 2320-2335 16 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile62 Downloads (Pure) -
Central-Smoothing Hypergraph Neural Networks for Predicting Drug-Drug Interactions
Nguyen, D. A., Nguyen, C. H. & Mamitsuka, H., 3 Apr 2024, In: IEEE Transactions on Neural Networks and Learning Systems . 35, 8, p. 11620-11625 6 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access8 Citations (Scopus) -
Chemical reaction enhanced graph learning for molecule representation
Li, A., Casiraghi, E. & Rousu, J., 1 Oct 2024, In: Bioinformatics (Oxford, England). 40, 10, p. 1-9 9 p., btae558.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile19 Downloads (Pure) -
Cognitive abilities predict performance in everyday computer tasks
Lintunen, E., Salmela, V., Jarre, P., Heikkinen, T., Kilpeläinen, M., Jokela, M. & Oulasvirta, A., 16 Aug 2024, In: International Journal of Human-Computer Studies. 192, p. 1-19 19 p., 103354.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile124 Downloads (Pure) -
Collaborative learning from distributed data with differentially private synthetic data
Prediger, L., Jälkö, J., Honkela, A. & Kaski, S., 14 Jun 2024, In: BMC Medical Informatics and Decision Making. 24, 1, p. 1-14 14 p., 167.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile2 Citations (Scopus)14 Downloads (Pure) -
Configurations of Digital Participatory Budgeting
Palacin, V., McDonald, S., Aragón, P. & Nelimarkka, M., 5 Feb 2024, In: ACM Transactions on Computer-Human Interaction. 31, 2, p. 1-27 27 p., 28.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile6 Citations (Scopus)11 Downloads (Pure) -
Cooperative multi-objective Bayesian design optimization
Mo, G., Dudley, J., Chan, L., Liao, Y. C., Oulasvirta, A. & Kristensson, P. O., 24 Jun 2024, In: ACM Transactions on Interactive Intelligent Systems. 14, 2, 28 p., 13.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)24 Downloads (Pure) -
Cross-Validatory Model Selection for Bayesian Autoregressions with Exogenous Regressors
Cooper, A., Simpson, D., Kennedy, L., Forbes, C. & Vehtari, A., 2024, (E-pub ahead of print) In: Bayesian Analysis. p. 1-25Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
Cybersecurity Education in Universities : A Comprehensive Guide to Curriculum Development
Ramezanian, S. & Niemi, V., 7 May 2024, In: IEEE Access. 12, p. 61741-61766 26 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)240 Downloads (Pure) -
Data-Driven Compound Identification in Atmospheric Mass Spectrometry
Sandström, H., Rissanen, M. P., Rousu, J. & Rinke, P., 23 Feb 2024, In: Advanced Science. 11, 8, 17 p., 2306235.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile4 Citations (Scopus)61 Downloads (Pure) -
Deep learning architecture for scatter estimation in cone-beam computed tomography head imaging with varying field-of-measurement settings
Agrawal, H., Hietanen, A. & Särkkä, S., 1 Sept 2024, In: Journal of Medical Imaging. 11, 5, p. 53501 1 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile30 Downloads (Pure) -
DesignQuizzer: A Community-Powered Conversational Agent for Learning Visual Design
Peng, Z., Chen, Q., Shen, Z., Ma, X. & Oulasvirta, A., 23 Apr 2024, In: Proceedings of the ACM on Human-Computer Interaction. 8, CSCW1, 40 p., 44.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access4 Citations (Scopus) -
Disentangling degree and tie strength heterogeneity in egocentric social networks
Heydari, S., Iñiguez, G., Kertész, J. & Saramäki, J., 18 Dec 2024, In: EPJ Data Science. 13, 1, p. 1-16 16 p., 76.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile2 Downloads (Pure) -
Entity Footprinting: Modeling Contextual User States via Digital Activity Monitoring
Rezaei Yousefi, Z., Vuong, T., Al-Ghossein, M., Ruotsalo, T., Jacucci, G. & Kaski, S., 22 Apr 2024, In: ACM Transactions on Interactive Intelligent Systems. 14, 2, 26 p., 9.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)36 Downloads (Pure) -
Explainable empirical risk minimization
Zhang, L., Karakasidis, G., Odnoblyudova, A., Dogruel, L., Tian, Y. & Jung, A., Mar 2024, In: Neural Computing and Applications. 36, 8, p. 3983-3996Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)56 Downloads (Pure) -
Explaining crowdworker behaviour through computational rationality
Hedderich, M. A. & Oulasvirta, A., 24 Apr 2024, (E-pub ahead of print) In: BEHAVIOUR AND INFORMATION TECHNOLOGY.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile23 Downloads (Pure) -
Gaussian-Based Parametric Bijections for Automatic Projection Filters
Emzir, M. F., Zhao, Z., Cheded, L. & Sarkka, S., May 2024, In: IEEE Transactions on Automatic Control. 69, 5, p. 3449-3456 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access3 Citations (Scopus) -
GORetriever : Reranking protein-description-based GO candidates by literature-driven deep information retrieval for protein function annotation
Yan, H., Wang, S., Liu, H., Mamitsuka, H. & Zhu, S., 1 Sept 2024, In: Bioinformatics. 40, p. ii53-ii61Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)14 Downloads (Pure) -
Human-in-the-loop active learning for goal-oriented molecule generation
Nahal, Y., Menke, J., Martinelli, J., Heinonen, M., Kabeshov, M., Janet, J. P., Nittinger, E., Engkvist, O. & Kaski, S., 9 Dec 2024, In: Journal of Cheminformatics. 16, 1, 24 p., 138.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)11 Downloads (Pure) -
Intelligent digital tools for screening of brain connectivity and dementia risk estimation in people affected by mild cognitive impairment: the AI-Mind clinical study protocol
Haraldsen, I. H., Hatlestad-Hall, C., Marra, C., Renvall, H., Maestu, F., Acosta-Hernandez, J., Alfonsin, S., Andersson, V., Anand, A., Ayllon, V., Babic, A., Belhadi, A., Birck, C., Bruna, R., Caraglia, N., Carrarini, C., Christensen, E., Cicchetti, A., Daugbjerg, S. & Di Bidino, R. & 49 others, , 5 Jan 2024, In: Frontiers in Neurorobotics. 17, p. 1-15 15 p., 1289406.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile11 Citations (Scopus)35 Downloads (Pure)