Datasets
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Search results
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Dataset: "Probabilistic Framework for Integration of Mass Spectrum and Retention Time Information in Small Molecule Identification"
Bach, E. (Creator), Zenodo, 1 Apr 2020
Dataset
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CT Data of a Pen-Spring: Application to Under-Sampled Dynamic X-ray Tomography
Juurakko, J. (Creator), Purisha, Z. (Creator) & Särkkä, S. (Creator), Zenodo, 3 Jul 2019
Dataset
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aalto-ics-kepaco/msms_rt_score_integration: Relase for the Bioinformatics publication
Bach, E. (Creator), Zenodo, 2020
DOI: 10.5281/zenodo.4306269, https://doi.org/10.5281/zenodo.4306270
Dataset: Software or code
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Result files (ONLYSTEREO): "Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data"
Bach, E. (Creator), Zenodo, 2022
Dataset
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Data from: Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
Skwark, M. (Creator), Croucher, N. J. (Contributor), Puranen, S. (Contributor), Chewapreecha, C. (Contributor), Pesonen, M. (Contributor), Xu, Y. (Contributor), Turner, P. (Contributor), Harris, S. R. (Contributor), Beres, S. B. (Contributor), Musser, J. M. (Contributor), Parkhill, J. (Contributor), Bentley, S. D. (Contributor), Aurell, E. (Contributor) & Corander, J. (Contributor), Dryad Digital Repository, 22 Feb 2017
DOI: 10.5061/dryad.gd14g, https://datadryad.org/resource/doi:10.5061/dryad.gd14g and 3 more links, https://doi.org/10.5061/dryad.gd14g/2, https://doi.org/10.5061/dryad.gd14g/1, https://doi.org/10.5061/dryad.gd14g/3 (show fewer)
Dataset
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Biological constraints for parameter values of large-scale biologically plausible human Neuroscience models
Williams, N. (Creator), Ojanperä, A. (Contributor), Siebenhühner, F. (Contributor), Toselli, B. (Contributor), Palva, S. (Contributor), Arnulfo, G. (Contributor), Kaski, S. (Contributor) & Palva, M. (Contributor), Mendeley Data, 2023
DOI: 10.17632/5kgw7ssbpx.1, https://data.mendeley.com/datasets/5kgw7ssbpx
Dataset
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aalto-ics-kepaco/lcms2struct_exp: Nature Machine Intelligence
Bach, E. (Creator), Zenodo, 2022
DOI: 10.5281/zenodo.7043686, https://zenodo.org/record/7057255
Dataset: Software or code
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Additional file 2 of Probabilistic modeling methods for cell-free DNA methylation based cancer classification
Halla-aho, V. (Creator) & Lähdesmäki, H. (Creator), figshare, 5 Apr 2022
DOI: 10.6084/m9.figshare.19518510, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518510
Dataset
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Improving Artificial Teachers by Considering How People Learn and Forget: Dataset
Nioche, A. (Creator), Murena, P.-A. (Creator), de la Torre-Ortiz, C. (Creator) & Oulasvirta, A. (Creator), Zenodo, 2021
Dataset
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Drug combination data used for comboLTR in "Modeling drug combination effects via latent tensor reconstruction"
Wang, T. (Creator), Szedmak, S. (Creator), Wang, H. (Creator), Aittokallio, T. (Creator), Pahikkala, T. (Creator), Cichonska, A. (Creator) & Rousu, J. (Creator), Zenodo, 2021
DOI: 10.5281/zenodo.4625083, https://zenodo.org/record/4625084
Dataset
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LC-MS² meta data for each MassBank (MB) subset
Bach, E. (Creator), Zenodo, 2022
DOI: 10.5281/zenodo.7056047, https://zenodo.org/record/7056047
Dataset
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LuxHMM: DNA methylation analysis with genome segmentation via hidden Markov model
Malonzo, M. H. (Creator) & Lähdesmäki, H. (Creator), figshare, 13 Apr 2023
DOI: 10.6084/m9.figshare.c.6584741, https://springernature.figshare.com/collections/LuxHMM_DNA_methylation_analysis_with_genome_segmentation_via_hidden_Markov_model/6584741
Dataset
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Protein function prediction through multi-view multi-label latent tensor reconstruction
Armah-Sekum, R. E. (Creator), Szedmak, S. (Creator) & Rousu, J. (Creator), figshare, 3 May 2024
DOI: 10.6084/m9.figshare.c.7215643.v1, https://springernature.figshare.com/collections/Protein_function_prediction_through_multi-view_multi-label_latent_tensor_reconstruction/7215643/1
Dataset
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massbank2db: Build a machine learning ready SQLite database from MassBank
Bach, E. (Creator), Zenodo, 2022
Dataset: Software or code
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nicholasjclark/mvgam: v1.1.4
Clark, N. (Creator), Senyondo, H. (Creator) & Vehtari, A. (Creator), Zenodo, 19 Feb 2025
Dataset: Software or code
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Metabolite identification dataset: "Magnitude-Preserving Ranking for Structured Outputs" Brouard et al. (2017)
Bach, E. (Creator), Zenodo, 2022
DOI: 10.5281/zenodo.7189944, https://zenodo.org/record/7189944
Dataset
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Critical Assessment of Small Molecule Identification 2016: automated methods
Schymanski, E. L. (Creator), Ruttkies, C. (Creator), Krauss, M. (Creator), Brouard, C. (Creator), Kind, T. (Creator), Dührkop, K. (Creator), Allen, F. (Creator), Vaniya, A. (Creator), Verdegem, D. (Creator), Böcker, S. (Creator), Rousu, J. (Creator), Shen, H. (Creator), Tsugawa, H. (Creator), Sajed, T. (Creator), Fiehn, O. (Creator), Ghesquière, B. (Creator) & Neumann, S. (Creator), figshare, 28 Mar 2017
DOI: 10.6084/m9.figshare.c.3727522.v1, https://figshare.com/collections/Critical_Assessment_of_Small_Molecule_Identification_2016_automated_methods/3727522/1
Dataset
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Pre-rendered training and testing dataset for the paper Deep Convolutional Reconstruction for Gradient-Domain Rendering
Kettunen, M. (Creator), Härkönen, E. (Creator) & Lehtinen, J. (Creator), Zenodo, 20 Dec 2019
Dataset
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Pre-configured Mitsuba scenes for the paper Deep Convolutional Reconstruction for Gradient-Domain Rendering
Kettunen, M. (Creator), Härkönen, E. (Creator) & Lehtinen, J. (Creator), Zenodo, 2019
Dataset
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Additional file 3 of Probabilistic modeling methods for cell-free DNA methylation based cancer classification
Halla-aho, V. (Creator) & Lähdesmäki, H. (Creator), figshare, 5 Apr 2022
DOI: 10.6084/m9.figshare.19518513, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518513
Dataset
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CamOptimus
Cankorur-Cetinkaya, A. (Contributor), Dias, J. M. L. (Contributor), Kludas, J. (Creator), Slater, N. K. H. (Contributor), Rousu, J. (Creator), Oliver, S. G. (Contributor) & Dikicioglu, D. (Contributor), Apollo - University of Cambridge Repository , 1 Jan 2016
DOI: 10.17863/cam.10257, https://www.repository.cam.ac.uk/handle/1810/265930
Dataset
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Additional file 2 of Modeling binding specificities of transcription factor pairs with random forests
Antikainen, A. A. (Creator), Heinonen, M. (Creator) & Lähdesmäki, H. (Creator), figshare, 6 Jun 2022
DOI: 10.6084/m9.figshare.20003421, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Modeling_binding_specificities_of_transcription_factor_pairs_with_random_forests/20003421
Dataset
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VictoriaLyu/gpstuff: Evaluating Gaussian Process Metamodels and Sequential Designs for Noisy Level Set Estimation V1
Vehtari, A. (Creator), Vanhatalo, J. (Creator), Sivula, T. (Creator), Solin, A. (Creator), Siivola, E. (Creator), Hartmann, M. (Creator), Steinhart, J. (Creator) & Karikomi, M. (Creator), Zenodo, 2021
DOI: 10.5281/zenodo.4579993, https://zenodo.org/record/4579994
Dataset: Software or code
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MassBank/MassBank-data: Release version 2021.12
Schulze, T. (Creator), Meier, R. (Creator), Alygizakis, N. (Creator), Schymanski, E. (Creator), Bach, E. (Creator), Tanaka, S. (Creator) & Witting, M. (Creator), Zenodo, 2021
DOI: 10.5281/zenodo.3378723, https://zenodo.org/record/5775684
Dataset: Software or code