Research output per year
Research output per year
Organisation profile
Profile Information
Computational Life Sciences
Department of Computer Science Research area
Research on Computational modelling, data analysis and design of biological systems.
The research area covers the multi-disciplinary activities on computational modelling, data analysis and design of biological systems. The field focuses on the development of original computational methods and their application in collaboration with leading national and international experts in different branches of life sciences.
The research area is linked to health-related research programmes in HIIT and FCAI, and Aalto key research areas of Health and Wellbeing as well as Materials and Sustainable Use of Natural Resources.
Research topics: bioinformatics, cheminformatics, complex systems, computational chemistry, computational immunology, computational metabolomics, computational systems biology, DNA nanotechnology, medical imaging, neuroinformatics, personalized medicine, pharmacoinformatics, statistical epidemology, synthetic biology.
Research area webpage: https://www.aalto.fi/en/department-of-computer-science/computational-life-sciences
UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. Our work contributes towards the following SDG(s):
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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Talayeh Aledavood
- Department of Computer Science - University Lecturer
- Lecturer Aledavood Talayeh group - University Lecturer
- Computer Science Lecturers - University Lecturer
- Computer Science - Computational Life Sciences (CSLife) - University Lecturer
Person
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Wilhelmiina Hämäläinen
- Computer Science Lecturers - Senior University Lecturer
- Computer Science - Artificial Intelligence and Machine Learning (AIML) - Senior University Lecturer
- Computer Science - Computational Life Sciences (CSLife) - Senior University Lecturer
- Lecturer Hämäläinen Wilhelmiina group - Senior University Lecturer
- Department of Computer Science - Senior University Lecturer
Person: Teaching staff
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Harri Lähdesmäki
- Computer Science Professors - Professor (Associate Professor)
- Computer Science - Artificial Intelligence and Machine Learning (AIML) - Professor (Associate Professor)
- Computer Science - Computational Life Sciences (CSLife) - Professor (Associate Professor)
- Helsinki Institute for Information Technology (HIIT)
- Department of Computer Science - Professor (Associate Professor)
- Professorship Lähdesmäki Harri - Professor (Associate Professor)
Person: Professors, tenure track
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Adverse event prediction using a task-specific generative model
Ögretir, M., Lönnroth, O., Ramchandran, S., Tiikkainen, P., Leinonen, J. & Lähdesmäki, H., 28 Jul 2023. 5 p.Research output: Contribution to conference › Paper › Scientific › peer-review
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An importance sampling approach for reliable and efficient inference in Bayesian ordinary differential equation models
Timonen, J., Siccha, N., Bales, B., Lähdesmäki, H. & Vehtari, A., 18 Sept 2023, In: Stat. 12, 1, e614.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile6 Downloads (Pure) -
Dynamics of the Negative Discourse Toward COVID-19 Vaccines : Topic Modeling Study and an Annotated Data Set of Twitter Posts
Lindelöf, G., Aledavood, T. & Keller, B., 12 Apr 2023, In: JOURNAL OF MEDICAL INTERNET RESEARCH. 25, p. 1-16 16 p., e41319.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)17 Downloads (Pure)
Datasets
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Additional file 3 of Probabilistic modeling methods for cell-free DNA methylation based cancer classification
Halla-aho, V. (Creator) & Lähdesmäki, H. (Creator), figshare, 5 Apr 2022
DOI: 10.6084/m9.figshare.19518513, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518513
Dataset
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Probabilistic modeling methods for cell-free DNA methylation based cancer classification
Halla-aho, V. (Creator) & Lähdesmäki, H. (Contributor), figshare, 1 Jan 2022
DOI: 10.6084/m9.figshare.c.5931075.v1, https://springernature.figshare.com/collections/Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/5931075/1 and 4 more links, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518510/1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518513/1, https://springernature.figshare.com/articles/dataset/Additional_file_4_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518516/1, https://springernature.figshare.com/articles/journal_contribution/Additional_file_1_of_Probabilistic_modeling_methods_for_cell-free_DNA_methylation_based_cancer_classification/19518507/1 (show fewer)
Dataset
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Permutation-based significance analysis reduces the type 1 error rate in bisulfite sequencing data analysis of human umbilical cord blood samples
Laajala, E. (Creator), Halla-aho, V. (Creator), Grönroos, T. (Creator), Kalim, U. U. (Creator), Vähä-Mäkilä, M. (Creator), Nurmio, M. (Creator), Kallionpää, H. (Creator), Lietzén, N. (Creator), Mykkänen, J. (Creator), Rasool, O. (Creator), Toppari, J. (Creator), University, M. (Creator), Knip, M. (Creator), Lund, R. (Creator), Lahesmaa, R. (Creator) & Lähdesmäki, H. (Creator), figshare, 2022
DOI: 10.6084/m9.figshare.19311109.v2, https://tandf.figshare.com/articles/dataset/Permutation-based_significance_analysis_reduces_the_type_1_error_rate_in_bisulfite_sequencing_data_analysis_of_human_umbilical_cord_blood_samples/19311109/1
Dataset
Prizes
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Knight First Class of the Order of the White Rose of Finland
Orponen, Pekka (Recipient), 6 Dec 2021
Prize: Award or honor granted for academic or artistic career
Activities
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The effect of written metalinguistic feedback on cognitive effort and revision success
Jan-Mikael Rybicki (Speaker), Wilhelmiina Hämäläinen (Contributor), Kari K. Pitkänen (Contributor) & Lauri Malmi (Contributor)
23 Aug 2023Activity: Talk or presentation types › Conference presentation
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Informatics Europe (External organisation)
Pekka Orponen (Member)
2022Activity: Memberships (typically long-term positions of trust) › Position of trust in an academic community
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Nicolas Schabanel
Pekka Orponen (Host)
2 May 2022 → 3 May 2022Activity: Hosting a visitor types › Hosting an academic visitor
Press/Media
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University of Turku and Abo Akademi University Researchers Target Type 1 Diabetes (Serum APOC1 levels are decreased in young autoantibody positive children who rapidly progress to type 1 diabetes)
10/10/2023
1 item of Media coverage
Press/Media: Media appearance
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Research Data from University of Turku and Abo Akademi University Update Understanding of Data Analytics (Permutation-based significance analysis reduces the type 1 error rate in bisulphite sequencing data analysis of human umbilical cord blood ...)
05/10/2023
1 item of Media coverage
Press/Media: Media appearance
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Studies from Aalto University Add New Findings in the Area of COVID-19 (The impact of the COVID-19 pandemic on daily rhythms)
17/08/2023
1 item of Media coverage
Press/Media: Media appearance