Centre of Excellence in Computational Inference, COIN

Organisational unit: Research group

Research outputs

  1. 2020
  2. Published

    High-dimensional structure learning of binary pairwise Markov networks: A comparative numerical study

    Pensar, J., Xu, Y., Puranen, S., Pesonen, M., Kabashima, Y. & Corander, J., 1 Jan 2020, In : Computational Statistics and Data Analysis. 141, p. 62-76 15 p.

    Research output: Contribution to journalArticle

  3. Accepted/In press

    Geometric Image Correspondence Verification by Dense Pixel Matching

    Laskar, Z., Melekhov, I., Rezazadegan Tavakoli, H., Ylioinas, J. & Kannala, J., 2020, (Accepted/In press) IEEE Winter Conference on Applications of Computer Vision.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  4. Accepted/In press

    InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximization

    Sun, F-Y., Hoffman, J., Verma, V. & Tang, J., 2020, (Accepted/In press) International Conference on Learning Representations.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. Accepted/In press

    Learning spectrograms with convolutional spectral kernels

    Shen, Z., Heinonen, M. & Kaski, S., 2020, (Accepted/In press) The 23rd International Conference on Artificial Intelligence and Statistic. (Proceedings of Machine Learning Research).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  6. Accepted/In press

    SketchTransfer: A New Dataset for Exploring Detail-Invariance and the Abstractions Learned by Deep Networks

    Lamb, A., Ozair, S., Verma, V. & Ha, D., 2020, (Accepted/In press) 2020 Winter Conference on Applications of Computer Vision (WACV ’20).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  7. 2019
  8. Accepted/In press

    Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium.

    Arredondo-Alonso, S., Top, J., McNally, A., Puranen, S., Pesonen, M., Pensar, J., Marttinen, P., Braat, J., Rogers, M., van Schaik, W. & 4 others, Kaski, S., Willems, R. J. L., Corander, J. & Schürch, A., 23 Dec 2019, (Accepted/In press) In : MBIO.

    Research output: Contribution to journalArticle

  9. Published

    Deep Learning Fundus Image Analysis for Diabetic Retinopathy and Macular Edema Grading

    Sahlsten, J., Jaskari, J., Kivinen, J., Turunen, L., Jaanio, E., Hietala, K. & Kaski, K., 1 Dec 2019, In : Scientific Reports. 9, 1, p. 1-11 10750.

    Research output: Contribution to journalArticle

  10. Published

    Doubly Stochastic Neighbor Embedding on Spheres

    Lu, Y., Corander, J. & Yang, Z., 1 Dec 2019, In : Pattern Recognition Letters. 128, p. 100-106 7 p.

    Research output: Contribution to journalArticle

  11. Accepted/In press

    Machine Teaching of Active Sequential Learners

    Peltola, T., Çelikok, M. M., Daee, P. & Kaski, S., 28 Nov 2019, (Accepted/In press) 33rd Conference on Neural Information Processing Systems (NeurIPS 2019). p. 11202-11213 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  12. Published

    PicSOM and EURECOM Experiments in TRECVID 2019

    Laria Mantecon, H., Laaksonen, J., Francis, D. & Huet, B., Nov 2019, Proceedings of TRECVID 2019. NIST, 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionProfessional

  13. Published

    Geometry-aware relational exemplar attention for dense captioning

    Wang, T. J. J., Tavakoli, H. R., Sjöberg, M. & Laaksonen, J., 15 Oct 2019, MULEA 2019 - 1st International Workshop on Multimodal Understanding and Learning for Embodied Applications, co-located with MM 2019. p. 3-11 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  14. Published
  15. Published

    Genome-wide epistasis and co-selection study using mutual information

    Pensar, J., Puranen, S., Arnold, B., MacAlasdair, N., Kuronen, J., Tonkin-Hill, G., Pesonen, M., Xu, Y., Sipola, A., Sánchez-Busó, L. & 7 others, Lees, J. A., Chewapreecha, C., Bentley, S. D., Harris, S. R., Parkhill, J., Croucher, N. J. & Corander, J., 10 Oct 2019, In : Nucleic Acids Research. 47, 18, p. 1-14 e112.

    Research output: Contribution to journalArticle

  16. Published

    Local dimension reduction of summary statistics for likelihood-free inference

    Siren, J. & Kaski, S., 4 Oct 2019, In : STATISTICS AND COMPUTING. 12 p.

    Research output: Contribution to journalArticle

  17. Published

    Fuzzy least squares twin support vector machines

    Sartakhti, J. S., Afrabandpey, H. & Ghadiri, N., 1 Oct 2019, In : ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE. 85, p. 402-409 8 p.

    Research output: Contribution to journalArticle

  18. Published

    On the utility of neighbourhood singleton-style consistencies for qualitative constraint-based spatial and temporal reasoning

    Sioutis, M., Paparrizou, A. & Janhunen, T., 1 Oct 2019, 26th International Symposium on Temporal Representation and Reasoning, TIME 2019. Gamper, J., Pinchinat, S. & Sciavicco, G. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, p. 1-17 (Leibniz International Proceedings in Informatics, LIPIcs; vol. 147).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  19. Accepted/In press

    Deep Contextual Attention for Human-Object Interaction Detection

    Wang, T., Anwer, R. M., Khan, M. H., Khan, F. S., Pang, Y., Shao, L. & Laaksonen, J., Oct 2019, (Accepted/In press) Proceedings of the International Conference on Computer Vision (ICCV2019). IEEE, p. 5694-5702

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  20. Published
  21. Published

    Bayesian metabolic flux analysis reveals intracellular flux couplings

    Heinonen, M., Osmala, M., Mannerström, H., Wallenius, J., Kaski, S., Rousu, J. & Lähdesmäki, H., 15 Jul 2019, In : Bioinformatics. 35, 14, p. i548-i557 btz315.

    Research output: Contribution to journalArticle

  22. Published

    Block HSIC Lasso: Model-free biomarker detection for ultra-high dimensional data

    Climente-González, H., Azencott, C. A., Kaski, S. & Yamada, M., 15 Jul 2019, In : Bioinformatics. 35, 14, p. i427-i435 btz333.

    Research output: Contribution to journalArticle

  23. Published

    Representation transfer for differentially private drug sensitivity prediction

    Niinimäki, T., Heikkilä, M. A., Honkela, A. & Kaski, S., 15 Jul 2019, In : Bioinformatics. 35, 14, p. i218-i224 btz373.

    Research output: Contribution to journalArticle

  24. Published

    Learning Image Relations with Contrast Association Networks

    Lu, Y., Yang, Z., Kannala, J. & Kaski, S., 1 Jul 2019, 2019 International Joint Conference on Neural Networks, IJCNN 2019. Institute of Electrical and Electronics Engineers, 7 p. 8852344. (Proceedings of the International Joint Conference on Neural Networks; vol. 2019-July).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  25. Published

    Human-in-the-loop Active Covariance Learning for Improving Prediction in Small Data Sets

    Afrabandpey, H., Peltola, T. & Kaski, S., Jul 2019, Proceedings of the 28th International Joint Conference on Artificial Intelligence, IJCAI 2019. p. 1959-1966 8 p. (IJCAI International Joint Conference on Artificial Intelligence).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Published

    Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

    AstraZeneca-Sanger Drug Combination DREAM Consortium, Kaski, S. & Marttinen, P., 17 Jun 2019, In : Nature Communications. 10, 1, p. 1-17 17 p., 2674.

    Research output: Contribution to journalArticle

  27. Published
  28. Published

    A user study to compare two conversational assistants designed for people with hearing impairments

    Virkkunen, A., Lukkarila, J., Palomäki, K. & Kurimo, M., Jun 2019, Proceedings of the Eighth Workshop on Speech and Language Processing for Assistive Technologies. Association for Computational Linguistics (ACL), p. 1-8 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  29. Published

    Efficient acquisition rules for model-based approximate Bayesian computation

    Järvenpää, M., Gutmann, M. U., Pleska, A., Vehtari, A. & Marttinen, P., Jun 2019, In : Bayesian Analysis. 14, 2, p. 595-622 28 p.

    Research output: Contribution to journalArticle

  30. Published

    Harmonizable mixture kernels with variational Fourier features

    Shen, Z., Heinonen, M. & Kaski, S., May 2019, The 22nd International Conference on Artificial Intelligence and Statistic. p. 1812-1821 (Proceedings of Machine Learning Research; vol. 89).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  31. Published

    International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact

    Global Pneumococcal Sequencing, May 2019, In : Ebiomedicine. 43, p. 338-346 9 p.

    Research output: Contribution to journalArticle

  32. Published

    Thermal power of heat flow through a qubit

    Aurell, E. & Montana, F., 19 Apr 2019, In : Physical Review E. 99, 4, p. 1-14 042130.

    Research output: Contribution to journalArticle

  33. Published

    An additive Gaussian process regression model for interpretable non-parametric analysis of longitudinal data

    Cheng, L., Ramchandran, S., Vatanen, T., Lietzén, N., Lahesmaa, R., Vehtari, A. & Lähdesmäki, H., 17 Apr 2019, In : Nature Communications. 10, 1, p. 1-11 11 p., 1798.

    Research output: Contribution to journalArticle

  34. Published

    Variable selection for Gaussian processes via sensitivity analysis of the posterior predictive distribution

    Paananen, T., Piironen, J., Andersen, M. & Vehtari, A., 16 Apr 2019, Proceedings of the 22nd International Conference on Artificial Intelligence and Statistics. 10 p. (Proceedings of Machine Learning Research; vol. 89).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  35. Published

    A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation

    Järvenpää, M., Sater, M. R. A., Lagoudas, G. K., Blainey, P. C., Miller, L. G., McKinnell, J. A., Huang, S. S., Grad, Y. H. & Marttinen, P., 1 Apr 2019, In : PLoS computational biology. 15, 4, p. 1-25 e1006534.

    Research output: Contribution to journalArticle

  36. Published

    Discovering heritable modes of MEG spectral power

    Leppäaho, E., Renvall, H., Salmela, E., Kere, J., Salmelin, R. & Kaski, S., 1 Apr 2019, In : Human Brain Mapping . 40, 5, p. 1391-1402 12 p.

    Research output: Contribution to journalArticle

  37. Published

    Deep learning with differential Gaussian process flows

    Hegde, P., Heinonen, M., Lähdesmäki, H. & Kaski, S., Apr 2019, The 22nd International Conference on Artificial Intelligence and Statistic. Vol. 89. p. 1-15 16 p. (Proceedings of Machine Learning Research; vol. 89).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  38. Published

    Integrating neurophysiologic relevance feedback in intent modeling for information retrieval

    Jacucci, G., Barral, O., Daee, P., Wenzel, M., Serim, B., Ruotsalo, T., Pluchino, P., Freeman, J., Gamberini, L., Kaski, S. & 1 others, Blankertz, B., 12 Mar 2019, In : JOURNAL OF THE ASSOCIATION FOR INFORMATION SCIENCE AND TECHNOLOGY. 14 p.

    Research output: Contribution to journalArticle

  39. Published

    Digging deeper into egocentric gaze prediction

    Tavakoli, H. R., Rahtu, E., Kannala, J. & Borji, A., 4 Mar 2019, Proceedings - 2019 IEEE Winter Conference on Applications of Computer Vision, WACV 2019. Institute of Electrical and Electronics Engineers, p. 273-282 10 p. 8658619

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  40. Published

    Semantic matching by weakly supervised 2D point set registration

    Laskar, Z., Tavakoli, H. R. & Kannala, J., 4 Mar 2019, 2019 IEEE WINTER CONFERENCE ON APPLICATIONS OF COMPUTER VISION (WACV). Institute of Electrical and Electronics Engineers, p. 1061-1069 9 p. 8658796

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  41. Published

    Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis

    Kachroo, P., Eraso, J. M., Olsen, R. J., Beres, S. B., Zhu, L., Nasser, W., Bernard, P. E., Cantu, C. C., Saavedra, M. O., Arredondo, M. J. & 21 others, Strope, B., Do, H., Kumaraswami, M., Vuopio, J., Gröndahl-Yli-Hannuksela, K., Kristinsson, K. G., Gottfredsson, M., Pesonen, M., Pensar, J., Davenport, E. R., Clark, A. G., Corander, J., Caugant, D. A., Gaini, S., Magnussen, M. D., Kubiak, S. L., Nguyen, H. A. T., Long, S. W., Porter, A. R., DeLeo, F. R. & Musser, J. M., 1 Mar 2019, In : NATURE GENETICS. 51, 3, p. 548-559 12 p.

    Research output: Contribution to journalArticle

  42. Published

    DCA for genome-wide epistasis analysis: The statistical genetics perspective

    Gao, C. Y., Cecconi, F., Vulpiani, A., Zhou, H. J. & Aurell, E., 29 Jan 2019, In : Physical Biology. 16, 2, 026002.

    Research output: Contribution to journalArticle

  43. Published

    North Sámi morphological segmentation with low-resource semi-supervised sequence labeling

    Grönroos, S-A., Virpioja, S. & Kurimo, M., 7 Jan 2019, Fifth Workshop on Computational Linguistics for Uralic Languages: Proceedings of the Workshop. p. 15-26 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  44. Published

    Adversarial mixup resynthesizers

    Beckham, C., Honari, S., Verma, V., Lamb, A., Ghadiri, F., Hjelm, R. D. & Pal, C., 1 Jan 2019.

    Research output: Contribution to conferencePaperScientificpeer-review

  45. Published

    Diagnosing Data Pipeline Failures Using Action Languages

    Bomanson, J. & Brik, A., 1 Jan 2019, Logic Programming and Nonmonotonic Reasoning - 15th International Conference, LPNMR 2019, Proceedings. Lierler, Y., Woltran, S. & Balduccini, M. (eds.). Springer Verlag, p. 181-194 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11481 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  46. Published
  47. Accepted/In press

    Embarrassingly parallel MCMC using deep invertible transformations

    Mesquita, D., Blomstedt, P. & Kaski, S., 1 Jan 2019, (Accepted/In press) Proceedings of the Thirty-Fifth Conference on Uncertainty in Artificial Intelligence, UAI 2019, Tel Aviv, Israel, July 22-25, 2019. AUAI Press

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  48. Published

    Multi-stream Convolutional Networks for Indoor Scene Recognition

    Anwer, R. M., Khan, F. S., Laaksonen, J. & Zaki, N., 1 Jan 2019, Computer Analysis of Images and Patterns - 18th International Conference, CAIP 2019, Proceedings. Vento, M. & Percannella, G. (eds.). Springer Verlag, p. 196-208 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11678 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  49. Published

    Scalable Bayesian non-linear matrix completion

    Qin, X., Blomstedt, P. & Kaski, S., 1 Jan 2019, Proceedings of the 28th International Joint Conference on Artificial Intelligence, IJCAI 2019. Kraus, S. (ed.). p. 3275-3281 7 p. (IJCAI International Joint Conference on Artificial Intelligence; vol. 2019-August).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  50. Published

    Subword RNNLM approximations for out-of-vocabulary keyword search

    Singh, M., Virpioja, S., Smit, P. & Kurimo, M., 1 Jan 2019, Proceedings of Interspeech. International Speech Communication Association, Vol. 2019-September. p. 4235-4239 5 p. (Interspeech - Annual Conference of the International Speech Communication Association).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  51. Published

    The Return of xorro

    Everardo, F., Janhunen, T., Kaminski, R. & Schaub, T., 1 Jan 2019, Logic Programming and Nonmonotonic Reasoning - 15th International Conference, LPNMR 2019, Proceedings. Balduccini, M., Lierler, Y. & Woltran, S. (eds.). Springer Verlag, p. 284-297 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11481 LNAI).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. Published

    Towards Cycle-Consistent Models for Text and Image Retrieval

    Cornia, M., Baraldi, L., Rezazadegan Tavakoli, H. & Cucchiara, R., 1 Jan 2019, Computer Vision – ECCV 2018 Workshops, Proceedings. Leal-Taixé, L. & Roth, S. (eds.). p. 687-691 5 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11132 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

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