PLoS computational biology

Research outputs

  1. 2019
  2. Published

    A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation

    Järvenpää, M., Sater, M. R. A., Lagoudas, G. K., Blainey, P. C., Miller, L. G., McKinnell, J. A., Huang, S. S., Grad, Y. H. & Marttinen, P., 1 Apr 2019, In : PLoS computational biology. 15, 4, p. 1-25 e1006534.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2017
  4. Published

    Tracking urban human activity from mobile phone calling patterns

    Monsivais, D., Ghosh, A., Bhattacharya, K., Dunbar, R. I. M. & Kaski, K., 1 Nov 2017, In : PLoS computational biology. 13, 11, p. 1-16 e1005824.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors

    Cichonska, A., Ravikumar, B., Parri, E., Timonen, S., Pahikkala, T., Airola, A., Wennerberg, K., Rousu, J. & Aittokallio, T., 1 Aug 2017, In : PLoS computational biology. 13, 8, p. 1-28 e1005678.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Speciation trajectories in recombining bacterial species

    Marttinen, P. & Hanage, W. P., 3 Jul 2017, In : PLoS computational biology. 13, 7, p. 1-15 15 p., e1005640.

    Research output: Contribution to journalArticleScientificpeer-review

  7. 2016
  8. Published

    The Maximum Entropy Fallacy Redux?

    Aurell, E., 1 May 2016, In : PLoS computational biology. 12, 5, p. 1-7 e1004777.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Radial Frequency Analysis of Contour Shapes in the Visual Cortex

    Salmela, V. R., Henriksson, L. & Vanni, S., 1 Feb 2016, In : PLoS computational biology. 12, 2, p. 1-18 18 p., e1004719.

    Research output: Contribution to journalArticleScientificpeer-review

  10. 2014
  11. Published

    Hydrophobin Film Structure for HFBI and HFBII and Mechanism for Accelerated Film Formation

    Magarkar, A., Mele, N., Abdel-Rahman, N., Butcher, S., Torkkeli, M., Serimaa, R., Paananen, A., Linder, M. & Bunker, A., 31 Jul 2014, In : PLoS computational biology. 10, 7, p. 1-13 13 p., e1003645.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species

    Pitkänen, E., Jouhten, P., Hou, J., Fahad Syed, M., Blomberg, P., Kludas, J., Oja, M., Holm, L., Penttilä, M. & Rousu, J., 2014, In : PLoS computational biology. 10, 2, p. 1-12 e1003465.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns

    Skwark, M. J., Raimondi, D., Michel, M. & Elofsson, A., 2014, In : PLoS computational biology. 10, 11, p. 1-14 e1003889.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Improving Contact Prediction along Three Dimensions

    Feinauer, C., Skwark, M. J., Pagnani, A. & Aurell, E., 2014, In : PLoS computational biology. 10, 10, p. 1-13 e1003847.

    Research output: Contribution to journalArticleScientificpeer-review

  15. 2013
  16. Published

    Biomarker Discovery by Sparse Canonical Correlation Analysis of Complex Clinical Phenotypes of Tuberculosis and Malaria

    Rousu, J., Agranoff, D. D., Sodeinde, O., Shawe-Taylor, J. & Fernandez-Reyes, D., 2013, In : PLoS computational biology. 9, 4, p. 1-10 1003018.

    Research output: Contribution to journalArticleScientificpeer-review

  17. 2011
  18. Published

    Metabolic regulation in progression to autoimmune diabetes

    Sysi-Aho, M., Ermolov, A., Gopalacharyulu, P. V., Tripathi, A., Seppänen-Laakso, T., Maukonen, J., Mattila, I., Ruohonen, S. T., Vähätalo, L., Yetukuri, L. & 10 othersHärkönen, T., Lindfors, E., Nikkilä, J., Ilonen, J., Simell, O., Saarela, M., Knip, M., Kaski, S., Savontaus, E. & Oresic, M., 2011, In : PLoS computational biology. 7, 10, p. 1-16 e1002257.

    Research output: Contribution to journalArticleScientificpeer-review

  19. 2010
  20. Published

    Rolf of lipids in spheroidal high density lipoproteins

    Vuorela, T., Catte, A., Niemelä, P. S., Hall, A., Hyvönen, M. T., Marrink, S. J., Karttunen, M. & Vattulainen, I., 2010, In : PLoS computational biology. 6, 10, p. 1-14 e1000964.

    Research output: Contribution to journalArticleScientificpeer-review

  21. 2009
  22. Published

    Conformational changes and slow dynamics through microsecond polarized molecular simulation of an integral Kv1.2 ion channel

    Bjelkmar, P., Niemela, P., Vattulainen, I. & Lindahl, E., 2009, In : PLoS computational biology. 5, p. e1000289

    Research output: Contribution to journalArticleScientificpeer-review

  23. 2007
  24. Published

    Assessing the Nature of Lipid Raft Membranes

    Niemelä, P. S., Ollila, S., Hyvönen, M. T., Karttunen, M. & Vattulainen, I., 2007, In : PLoS computational biology. 3, 2, p. 304-312 e34.

    Research output: Contribution to journalArticleScientificpeer-review

  25. 2006
  26. Published

    Seriation in Paleontological Data Using Markov Chain Monte Carlo Methods

    Puolamäki, K., Fortelius, M. & Mannila, H., 2006, In : PLoS computational biology. 2, 2, p. 62-70 e6.

    Research output: Contribution to journalArticleScientificpeer-review

ID: 363825