PLoS computational biology

Research outputs

  1. 2019
  2. Accepted/In press

    Seven quick tips for analysis scripts in neuroimaging

    van Vliet, M., 26 Aug 2019, (Accepted/In press) In : PLoS computational biology. 13 p.

    Research output: Contribution to journalArticle

  3. Published

    Pulse transit time estimation of aortic pulse wave velocity and blood pressure using machine learning and simulated training data

    Huttunen, J. M. J., Kärkkäinen, L. & Lindholm, H., 1 Aug 2019, In : PLoS computational biology. 15, 8, p. e1007259

    Research output: Contribution to journalArticle

  4. Published

    Modeling enamel matrix secretion in mammalian teeth

    Häkkinen, T. J., Sova, S. S., Corfe, I. J., Tjäderhane, L., Hannukainen, A. & Jernvall, J., 1 May 2019, In : PLoS computational biology. 15, 5, p. 1-12 e1007058.

    Research output: Contribution to journalArticle

  5. Published

    A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation

    Järvenpää, M., Sater, M. R. A., Lagoudas, G. K., Blainey, P. C., Miller, L. G., McKinnell, J. A., Huang, S. S., Grad, Y. H. & Marttinen, P., 1 Apr 2019, In : PLoS computational biology. 15, 4, p. 1-25 e1006534.

    Research output: Contribution to journalArticle

  6. 2017
  7. Published

    Tracking urban human activity from mobile phone calling patterns

    Monsivais, D., Ghosh, A., Bhattacharya, K., Dunbar, R. I. M. & Kaski, K., 1 Nov 2017, In : PLoS computational biology. 13, 11, p. 1-16 e1005824.

    Research output: Contribution to journalArticle

  8. Published

    Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors

    Cichonska, A., Ravikumar, B., Parri, E., Timonen, S., Pahikkala, T., Airola, A., Wennerberg, K., Rousu, J. & Aittokallio, T., 1 Aug 2017, In : PLoS computational biology. 13, 8, p. 1-28 e1005678.

    Research output: Contribution to journalArticle

  9. Published

    Speciation trajectories in recombining bacterial species

    Marttinen, P. & Hanage, W. P., 3 Jul 2017, In : PLoS computational biology. 13, 7, p. 1-15 15 p., e1005640.

    Research output: Contribution to journalArticle

  10. 2016
  11. Published

    The Maximum Entropy Fallacy Redux?

    Aurell, E., 1 May 2016, In : PLoS computational biology. 12, 5, p. 1-7 e1004777.

    Research output: Contribution to journalArticle

  12. Published

    Radial Frequency Analysis of Contour Shapes in the Visual Cortex

    Salmela, V. R., Henriksson, L. & Vanni, S., 1 Feb 2016, In : PLoS computational biology. 12, 2, p. 1-18 18 p., e1004719.

    Research output: Contribution to journalArticle

  13. 2014
  14. Published

    Hydrophobin Film Structure for HFBI and HFBII and Mechanism for Accelerated Film Formation

    Magarkar, A., Mele, N., Abdel-Rahman, N., Butcher, S., Torkkeli, M., Serimaa, R., Paananen, A., Linder, M. & Bunker, A., 31 Jul 2014, In : PLoS computational biology. 10, 7, p. 1-13 13 p., e1003645.

    Research output: Contribution to journalArticle

  15. Published

    Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species

    Pitkänen, E., Jouhten, P., Hou, J., Fahad Syed, M., Blomberg, P., Kludas, J., Oja, M., Holm, L., Penttilä, M. & Rousu, J., 2014, In : PLoS computational biology. 10, 2, p. 1-12 e1003465.

    Research output: Contribution to journalArticle

  16. Published

    Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns

    Skwark, M. J., Raimondi, D., Michel, M. & Elofsson, A., 2014, In : PLoS computational biology. 10, 11, p. 1-14 e1003889.

    Research output: Contribution to journalArticle

  17. Published

    Improving Contact Prediction along Three Dimensions

    Feinauer, C., Skwark, M. J., Pagnani, A. & Aurell, E., 2014, In : PLoS computational biology. 10, 10, p. 1-13 e1003847.

    Research output: Contribution to journalArticle

  18. 2013
  19. Published

    Biomarker Discovery by Sparse Canonical Correlation Analysis of Complex Clinical Phenotypes of Tuberculosis and Malaria

    Rousu, J., Agranoff, D. D., Sodeinde, O., Shawe-Taylor, J. & Fernandez-Reyes, D., 2013, In : PLoS computational biology. 9, 4, p. 1-10 1003018.

    Research output: Contribution to journalArticle

  20. 2012
  21. Published

    Lipid exchange mechanism of the cholesteryl ester transfer protein clarified by atomistic and coarse-grained simulations

    Koivuniemi, A., Vuorela, T., Kovanen, P. T., Vattulainen, I. & Hyvönen, M. T., Jan 2012, In : PLoS computational biology. 8, 1, e1002299.

    Research output: Contribution to journalArticle

  22. 2011
  23. Published

    Metabolic regulation in progression to autoimmune diabetes

    Sysi-Aho, M., Ermolov, A., Gopalacharyulu, P. V., Tripathi, A., Seppänen-Laakso, T., Maukonen, J., Mattila, I., Ruohonen, S. T., Vähätalo, L., Yetukuri, L. & 10 others, Härkönen, T., Lindfors, E., Nikkilä, J., Ilonen, J., Simell, O., Saarela, M., Knip, M., Kaski, S., Savontaus, E. & Oresic, M., 2011, In : PLoS computational biology. 7, 10, p. 1-16 e1002257.

    Research output: Contribution to journalArticle

  24. 2010
  25. Published

    Rolf of lipids in spheroidal high density lipoproteins

    Vuorela, T., Catte, A., Niemelä, P. S., Hall, A., Hyvönen, M. T., Marrink, S. J., Karttunen, M. & Vattulainen, I., 2010, In : PLoS computational biology. 6, 10, p. 1-14 e1000964.

    Research output: Contribution to journalArticle

  26. 2009
  27. Published

    Conformational changes and slow dynamics through microsecond polarized molecular simulation of an integral Kv1.2 ion channel

    Bjelkmar, P., Niemela, P., Vattulainen, I. & Lindahl, E., 2009, In : PLoS computational biology. 5, p. e1000289

    Research output: Contribution to journalArticle

  28. 2007
  29. Published

    Assessing the Nature of Lipid Raft Membranes

    Niemelä, P. S., Ollila, S., Hyvönen, M. T., Karttunen, M. & Vattulainen, I., 2007, In : PLoS computational biology. 3, 2, p. 304-312 e34.

    Research output: Contribution to journalArticle

  30. 2006
  31. Published

    Seriation in Paleontological Data Using Markov Chain Monte Carlo Methods

    Puolamäki, K., Fortelius, M. & Mannila, H., 2006, In : PLoS computational biology. 2, 2, p. 62-70 e6.

    Research output: Contribution to journalArticle

ID: 363825