Journal of Chemical Physics

Research outputs

  1. 2019
  2. Published

    Chemical diversity in molecular orbital energy predictions with kernel ridge regression

    Stuke, A., Todorović, M., Rupp, M., Kunkel, C., Ghosh, K., Himanen, L. & Rinke, P., 28 May 2019, In : Journal of Chemical Physics. 150, 20, p. 1-13 204121.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2018
  4. Published

    Understanding doped perovskite ferroelectrics with defective dipole model

    Liu, J., Jin, L., Jiang, Z., Liu, L., Himanen, L., Wei, J., Zhang, N., Wang, D. & Jia, C. L., 28 Dec 2018, In : Journal of Chemical Physics. 149, 24, 244122.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Diabatic model for electrochemical hydrogen evolution based on constrained DFT configuration interaction

    Holmberg, N. & Laasonen, K., 11 Sep 2018, In : Journal of Chemical Physics. 149, 10, 15 p., 104702.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Incorporating extrinsic noise into the stochastic simulation of biochemical reactions: A comparison of approaches

    Thanh, V. H., Marchetti, L., Reali, F. & Priami, C., 2018, In : Journal of Chemical Physics. 148, 6

    Research output: Contribution to journalArticleScientificpeer-review

  7. 2017
  8. Published

    Self-consistent assessment of Englert-Schwinger model on atomic properties

    Lehtomäki, J. & Lopez-Acevedo, O., 21 Dec 2017, In : Journal of Chemical Physics. 147, 23, p. 1-10 234102.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Nudged elastic band calculations accelerated with Gaussian process regression

    Koistinen, O-P., Dagbjartsdóttir, F. B., Ásgeirsson, V., Vehtari, A. & Jonsson, H., 21 Oct 2017, In : Journal of Chemical Physics. 147, 15, p. 1-14 152720.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Multivalent cation induced attraction of anionic polymers by like-charged pores

    Buyukdagli, S. & Ala-Nissila, T., 14 Oct 2017, In : Journal of Chemical Physics. 147, 14, p. 1-12 144901.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Controlling polymer capture and translocation by electrostatic polymer-pore interactions

    Buyukdagli, S. & Ala-Nissila, T., 21 Sep 2017, In : Journal of Chemical Physics. 147, 11, p. 1-14 114904.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Repulsion between oppositely charged rod-shaped macromolecules: role of overcharging and ionic confinement

    Antila, H., van Tassel, P. R. & Sammalkorpi, M., Sep 2017, In : Journal of Chemical Physics. 147, 12, 9 p., 124901.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Doping as a means to probe the potential dependence of dopamine adsorption on carbon-based surfaces: A first-principles study

    Aarva, A., Laurila, T. & Caro, M. A., 21 Jun 2017, In : Journal of Chemical Physics. 146, 23, 234704.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Density functional study of structure and dynamics in liquid antimony and Sb-n clusters

    Jones, R. O., Ahlstedt, O., Akola, J. & Ropo, M., 21 May 2017, In : Journal of Chemical Physics. 146, 19, p. 1-11 11 p., 194502.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Efficient stochastic simulation of biochemical reactions with noise and delays

    Thanh, V. H., Zunino, R. & Priami, C., 2017, In : Journal of Chemical Physics. 146, 8

    Research output: Contribution to journalArticleScientificpeer-review

  16. 2016
  17. Published

    Accurate schemes for calculation of thermodynamic properties of liquid mixtures from molecular dynamics simulations

    Caro, M. A., Laurila, T. & Lopez-Acevedo, O., 28 Dec 2016, In : Journal of Chemical Physics. 145, 24, 244504.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Collective excitations and viscosity in liquid Bi

    Ropo, M., Akola, J. & Jones, R. O., 14 Nov 2016, In : Journal of Chemical Physics. 145, 18, p. 1-8 184502.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Multiscale physics of rubber-ice friction

    Tuononen, A. J., Kriston, A. & Persson, B., 21 Sep 2016, In : Journal of Chemical Physics. 145, 11, 114703.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Efficient dynamical correction of the transition state theory rate estimate for a flat energy barrier

    Mökkönen, H., Ala-Nissilä, T. & Jónsson, H., 7 Sep 2016, In : Journal of Chemical Physics. 145, 9, p. 1-7 094901.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Electrostatics of polymer translocation events in electrolyte solutions

    Buyukdagli, S. & Ala-Nissilä, T., 7 Jul 2016, In : Journal of Chemical Physics. 145, 1, p. 1-11 014902.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Honeycomb and triangular domain wall networks in heteroepitaxial systems

    Elder, K. R., Chen, Z., Elder, K. L. M., Hirvonen, P., Mkhonta, S. K., Ying, S. C., Granato, E., Huang, Z. F. & Ala-Nissilä, T., 7 May 2016, In : Journal of Chemical Physics. 144, 17, p. 1-11 174703.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Electrostatic energy barriers from dielectric membranes upon approach of translocating DNA molecules

    Buyukdagli, S. & Ala-Nissilä, T., 28 Feb 2016, In : Journal of Chemical Physics. 144, 8, 11 p., 084902.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Dissipation in monotonic and non-monotonic relaxation to equilibrium

    Petersen, C. F., Evans, D. J. & Williams, S. R., 21 Feb 2016, In : Journal of Chemical Physics. 144, 7, 8 p., 074107.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Accelerating rejection-based simulation of biochemical reactions with bounded acceptance probability

    Thanh, V. H., Priami, C. & Zunino, R., 2016, In : Journal of Chemical Physics. 144, 22, 224108.

    Research output: Contribution to journalArticleScientificpeer-review

  26. 2015
  27. Published

    A model study of assisted adiabatic transfer of population in the presence of collisional dephasing

    Masuda, S. & Rice, S. A., 2015, In : Journal of Chemical Physics. 142, hyphen

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Computation of shear viscosity of colloidal suspensions by SRD-MD Ala-Nissila, T.

    Laganapan, AMK., Videcoq, A., Bienia, M., Ala-Nissila, T., Bochicchio, D. & Ferrando, R., 2015, In : Journal of Chemical Physics. 142, 14, p. 1-8 144101.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Enhancing conductivity of metallic carbon nanotube networks by transition metal adsorption

    Ketolainen, T., Havu, V. & Puska, M., 2015, In : Journal of Chemical Physics. 142, 5, p. 1-9 9 p., 054705.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Model-free estimation of the effective correlation time for C-H bond reorientation in amphiphilic bilayers: 1H-13C solid-state NMR and MD simulations

    Ferreira, T. M., Ollila, O. H. S., Pigliapochi, R., Dabkowska, A. P. & Topgaard, D., 2015, In : Journal of Chemical Physics. 142, 044905, 044905.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Nanoplasmonics simulations at the basis set limit through completeness-optimized, local numerical basis sets

    Rossi, T. P., Lehtola, S., Sakko, A., Puska, M. J. & Nieminen, R. M., 2015, In : Journal of Chemical Physics. 142, 9, p. 1-9 9 p., 094114.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    On the rejection-based algorithm for simulation and analysis of large-scale reaction networks

    Thanh, V. H., Zunino, R. & Priami, C., 2015, In : Journal of Chemical Physics. 142, 24

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published
  34. Published

    Simulation of biochemical reactions with time-dependent rates by the rejection-based algorithm

    Thanh, V. H. & Priami, C., 2015, In : Journal of Chemical Physics. 143, 5

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Theory of polymer translocation through a flickering nanopore under an alternating driving force

    Sarabadani, J., Ikonen, T. & Ala-Nissila, T., 2015, In : Journal of Chemical Physics. 143, 1, p. 1-10 074905.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Transition State Theory Approach to Polymer Escape from a One Dimensional Potential Well

    Mökkönen, H., Ikonen, T., Ala-Nissila, T. & Jonsson, H., 2015, In : Journal of Chemical Physics. 142, p. 1-8 224906.

    Research output: Contribution to journalArticleScientificpeer-review

  37. 2014
  38. Published

    Molecular reordering processes on ice (0001) surfaces from long timescale simulations

    Pedersen, A., Wikfeldt, K. T., Karssemeijer, L., Cuppen, H. & Jónsson, H., 21 Dec 2014, In : Journal of Chemical Physics. 141, 23, p. 1-11 234706.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Structure and dynamics in liquid bismuth and Bin clusters: A density functional study

    Akola, J., Atodiresei, N., Kalikka, J., Larrucea, J. & Jones, R. O., 21 Nov 2014, In : Journal of Chemical Physics. 141, 19, 10 p., 194503.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Towards numerically accurate many-body perturbation theory: Short-range correlation effects

    Gulans, A., 28 Oct 2014, In : Journal of Chemical Physics. 141, 16, 7 p., 164127.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Evidence of scaling in the high pressure phonon dispersion relations of some elemental solids

    Srivastava, D., Waghmare, U. V. & Sarkar, S. K., 28 Jul 2014, In : Journal of Chemical Physics. 141, 4, 044714.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Driven polymer transport through a periodically patterned channel

    Ikonen, T., 21 Jun 2014, In : Journal of Chemical Physics. 140, 23, p. 1-8 234906.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Improved initial guess for minimum energy path calculations

    Smidstrup, S., Pedersen, A., Stokbro, K. & Jónsson, H., 7 Jun 2014, In : Journal of Chemical Physics. 140, 21, p. 1-6 214106.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Efficient rejection-based simulation of biochemical reactions with stochastic noise and delays

    Thanh, V. H., Priami, C. & Zunino, R., 2014, In : Journal of Chemical Physics. 141, 13

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Electrostatic correlations on the ionic selectivity of cylindrical membrane nanopores

    Buyukdagli, S. & Ala-Nissilä, T., 2014, In : Journal of Chemical Physics. 140, p. 1-13 064701.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Iso-Flux Tension Propagation Theory of Driven Polymer Translocation: The Role of Initial Configurations

    Sarabadani, J., Ikonen, T. & Ala-Nissila, T., 2014, In : Journal of Chemical Physics. 141, p. 1-9 214907.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Orbital-free density functional theory implementation with the projector augmented-wave method

    Lehtomäki, J., Makkonen, I., Caro, M. A., Harju, A. & Lopez-Acevedo, O., 2014, In : Journal of Chemical Physics. 141

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Polymer escape from a confining potential

    Mökkönen, H., Ikonen, T., Jonsson, H. & Ala-Nissilä, T., 2014, In : Journal of Chemical Physics. 140, 5, p. 1-7 054907.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Structure and dynamics of polymer melt confined between two solid surfaces: A molecular dynamics study

    Sarabadani, J., Milchev, A. & Vilgis, T. A., 2014, In : Journal of Chemical Physics. 141, 044907, 044907.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Testing several recent van der Waals density functionals for layered structures

    Björkman, T., 2014, In : Journal of Chemical Physics. 141

    Research output: Contribution to journalArticleScientificpeer-review

  51. 2013
  52. Published

    CO dissociation on iron nanoparticles: Size and geometry effects

    Melander, M., Latsa, V. & Laasonen, K., 28 Oct 2013, In : Journal of Chemical Physics. 139, 16, p. 1-9 9 p., 164320.

    Research output: Contribution to journalArticleScientificpeer-review

  53. Published

    Phase separation of binary nonadditive hard sphere fluid mixture confined in random porous media

    Chen, W., 21 Oct 2013, In : Journal of Chemical Physics. 139, 15, 154712.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Bcc crystal-fluid interfacial free energy in Yukawa systems

    Heinonen, V., Mijailović, A., Achim, C. V., Ala-Nissilä, T., Rozas, R. E., Horbach, J. & Löwen, H., 28 Jan 2013, In : Journal of Chemical Physics. 138, 4, p. 1-8 044705.

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    Alteration of gas phase ion polarizabilities upon hydration in high dielectric liquids

    Buyukdagli, S. & Ala-Nissilä, T., 2013, In : Journal of Chemical Physics. 139, 4, p. 1-11 044907.

    Research output: Contribution to journalArticleScientificpeer-review

  56. Published

    A simple approximation for forces exerted on an AFM tip in liquid

    Watkins, M. & Reischl, B., 2013, In : Journal of Chemical Physics. 138

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Fluctuation theory of single-walled carbon nanotube formation

    Vosel, S. V., Onischuk, A. A., Purtov, P. A. & Nasibulin, A. G., 2013, In : Journal of Chemical Physics. 139

    Research output: Contribution to journalArticleScientificpeer-review

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