Computer Physics Communications

Research outputs

  1. 2019
  2. Published

    DScribe: Library of descriptors for machine learning in materials science

    Himanen, L., Jäger, M. O. J., Morooka, E. V., Federici Canova, F., Ranawat, Y. S., Gao, D. Z., Rinke, P. & Foster, A. S., 2019, In : Computer Physics Communications. 247, 12 p., 106949.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2018
  4. Published

    GPUQT: An efficient linear-scaling quantum transport code fully implemented on graphics processing units

    Fan, Z., Vierimaa, V. & Harju, A., Sep 2018, In : Computer Physics Communications. 230, p. 113-120

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Stochastic analysis of surface roughness models in quantum wires

    Nedjalkov, M., Ellinghaus, P., Weinbub, J., Sadi, T., Asenov, A., Dimov, I. & Selberherr, S., Jul 2018, In : Computer Physics Communications. 228, p. 30-37

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    TORBEAM 2.0, a paraxial beam tracing code for electron-cyclotron beams in fusion plasmas for extended physics applications

    Poli, E., Bock, A., Lochbrunner, M., Maj, O., Reich, M., Snicker, A., Stegmeir, A., Volpe, F., Bertelli, N., Bilato, R., Conway, G. D., Farina, D., Felici, F., Figini, L., Fischer, R., Galperti, C., Happel, T., Lin-Liu, Y. R., Marushchenko, N. B., Mszanowski, U. & 6 others, Poli, F. M., Stober, J., Westerhof, E., Zille, R., Peeters, A. G. & Pereverzev, G. V., Apr 2018, In : Computer Physics Communications. 225, p. 36-46

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Adaptive time-stepping Monte Carlo integration of Coulomb collisions

    Särkimäki, K., Hirvijoki, E. & Terävä, J., 1 Jan 2018, In : Computer Physics Communications. 222, p. 374-383 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. 2017
  9. Published

    Methods for compressible fluid simulation on GPUs using high-order finite differences

    Pekkilä, J., Väisälä, M. S., Käpylä, M. J., Käpylä, P. J. & Anjum, O., Aug 2017, In : Computer Physics Communications. 217, p. 11-22

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Efficient molecular dynamics simulations with many-body potentials on graphics processing units

    Fan, Z., Chen, W., Vierimaa, V. & Harju, A., 2017, In : Computer Physics Communications. 218, p. 10–16

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Lattice dynamics calculations based on density-functional perturbation theory in real space

    Shang, H., Carbogno, C., Rinke, P. & Scheffler, M., 2017, In : Computer Physics Communications. 215, p. 26–46

    Research output: Contribution to journalArticleScientificpeer-review

  12. 2016
  13. Published

    Exact diagonalization of quantum lattice models on coprocessors

    Siro, T. & Harju, A., 1 Oct 2016, In : Computer Physics Communications. 207, p. 274-281 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Global transition path search for dislocation formation in Ge on Si(001)

    Maras, E., Trushin, O., Stukowski, A., Ala-Nissilä, T. & Jónsson, H., Aug 2016, In : Computer Physics Communications. 205, p. 13-21

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    DNSLab: A gateway to turbulent flow simulation in Matlab

    Vuorinen, V. & Keskinen, K., Jun 2016, In : Computer Physics Communications. 203, p. 278-289 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Gyrokinetic full-torus simulations of ohmic tokamak plasmas in circular limiter configuration

    Korpilo, T., Gurchenko, A. D., Gusakov, E. Z., Heikkinen, J. A., Janhunen, S. J., Kiviniemi, T. P., Leerink, S., Niskala, P. & Perevalov, A. A., Jun 2016, In : Computer Physics Communications. 203, p. 128-137 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    The effects of spatial sampling on random noise for gyrokinetic PIC simulations in real space

    Kiviniemi, T. P. & Sauerwein, U., Jun 2016, In : Computer Physics Communications. 203, p. 162-167 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    An object oriented Python interface for atomistic simulations

    Hynninen, T., Himanen, L., Parkkinen, V., Musso, T., Corander, J. & Foster, A. S., Jan 2016, In : Computer Physics Communications. 198, p. 230-237 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. 2015
  20. Published

    Flexible and modular virtual scanning probe microscope

    Tracey, J., Federici Canova, F., Keisanen, O., Gao, D. Z., Spijker, P., Reischl, B. & Foster, A. S., 2015, In : Computer Physics Communications. 196, p. 429–438 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Method for finding mechanism and activation energy of magnetic transitions, applied to skyrmion and antivortex annihilation

    Bessarab, P. F., Uzdin, V. M. & Jónsson, H., 2015, In : Computer Physics Communications. 196, November 2015, p. 335-347

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Modelling neutral beams in fusion devices: Beamlet-based model for fast particle simulations

    Asunta, O., Govenius, J., Budny, R., Gorelenkova, M., Tardini, G., Kurki-Suonio, T., Salmi, A. & Sipilä, S., 2015, In : Computer Physics Communications. 188, March 2015, p. 33-46

    Research output: Contribution to journalArticleScientificpeer-review

  23. 2014
  24. Published

    ASCOT: Solving the kinetic equation of minority particle species in tokamak plasmas

    Hirvijoki, E., Asunta, O., Koskela, T., Kurki-Suonio, T., Miettunen, J., Sipila, S., Snicker, A. & Äkäslompolo, S., 2014, In : Computer Physics Communications. 185, p. 1310-1321

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Efficient linear-scaling quantum transport calculations on graphics processing units and applications on electron transport in graphene

    Fan, Z., Uppstu, A., Siro, T. & Harju, A., 2014, In : Computer Physics Communications. 185, p. 28-39

    Research output: Contribution to journalArticleScientificpeer-review

  26. 2013
  27. Published

    Synthetic Doppler spectroscopy and curvilinear camera diagnostics in the ERO code

    Makkonen, T., Groth, M., Airila, M. I., Janzer, A., Dux, R., Kurki-Suonio, T., Lunt, T., Mueller, H. W., Puetterich, T., Viezzer, E. & Upgrade team, ASDEX., Aug 2013, In : Computer Physics Communications. 184, 8, p. 1842-1847 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Accelerated molecular dynamics force evaluation on graphics processing units for thermal conductivity calculations

    Fan, Z., Siro, T. & Harju, A., 2013, In : Computer Physics Communications. 184, p. 1414-1425

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Hydrodynamic forces implemented into LAMMPS through a lattice-Boltzmann fluid

    Mackay, F. E., Ollila, S. T. T. & Denniston, C., 2013, In : Computer Physics Communications. 184, p. 2021-2031

    Research output: Contribution to journalArticleScientificpeer-review

  30. 2012
  31. Published

    Alfvén Eigenmodes and Neoclassical tearing modes for orbit-following implementations

    Hirvijoki, E., Snicker, A., Korpilo, T., Lauber, P., Poli, E., Schneller, M. & Kurki-Suonio, T., 2012, In : Computer Physics Communications. 183, 12, p. 2589-2593

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    A molecular dynamics implementation of the 3D Mercedes-Benz water model

    Hynninen, T., Dias, C. L., Mkrtchyan, A., Heinonen, V., Karttunen, M., Foster, A. S. & Ala-Nissila, T., 2012, In : Computer Physics Communications. 183, 2, p. 363-369 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Exact diagonalization of the Hubbard model on graphics processing units

    Siro, T. & Harju, A., 2012, In : Computer Physics Communications. 183, p. 1884-1889

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Interpolation for momentum conservation in 3D toroidal gyrokinetic particle simulation of plasmas

    Heikkinen, J. A., Korpilo, T., Janhunen, S. J., Kiviniemi, T. P. & Leerink, S., 2012, In : Computer Physics Communications. 183, 8, p. 1719-1727

    Research output: Contribution to journalArticleScientificpeer-review

  35. 2011
  36. Published

    Toward large-scale Hybrid Monte Carlo simulations of the Hubbard model on graphics processing units

    Wendt, K. A., Drut, J. E. & Lähde, T. A., Aug 2011, In : Computer Physics Communications. 182, 8, p. 1651-1656 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    CIF2Cell: Generating geometries for electronic structure programs

    Björkman, T., 2011, In : Computer Physics Communications. 182, 5, p. 1183

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Modelling opinion formation driven communities in social networks

    Iñiguez, G., Barrio, R. A., Kertész, J. & Kaski, K. K., 2011, In : Computer Physics Communications. 182, 9, p. 1866-1869

    Research output: Contribution to journalArticleScientificpeer-review

  39. 2009
  40. Published

    Ab initio molecular simulations with numeric atom-centered orbitals

    Blum, V., Gehrke, R., Hanke, F., Havu, P., Havu, V., Ren, X., Reuter, K. & Scheffler, M., Nov 2009, In : Computer Physics Communications. 180, 11, p. 2175-2196 22 p.

    Research output: Contribution to journalLiterature reviewScientificpeer-review

  41. Published

    Model of Community Emergence in Weighted Social Networks

    Kumpula, J., Onnela, J. P., Saramäki, J., Kertesz, J. & Kaski, K., 2009, In : Computer Physics Communications. 180, 4, p. 517-522

    Research output: Contribution to journalArticleScientificpeer-review

  42. 2007
  43. Published

    Long-range interactions and parallel scalability in molecular simulations

    Patra, M., Hyvönen, M. T., Falck, E., Sabouri-Ghomi, M., Vattulainen, I. & Karttunen, M., 2007, In : Computer Physics Communications. 176, p. 14-22

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Three-dimensional interactive Molecular Dynamics program for the study of defect dynamics in crystals

    Patriarca, M., Kuronen, A. & Robles, M., 2007, In : Computer Physics Communications. 176, p. 38-47

    Research output: Contribution to journalArticleScientificpeer-review

  45. 2004
  46. Published

    Unconstrained periodic boundary conditions for solid state elasticity

    Linna, R., Åström, J. A. & Timonen, J., 2004, In : Computer Physics Communications. 158, p. 26-38

    Research output: Contribution to journalArticleScientificpeer-review

  47. 2003
  48. Published

    How Would You Integrate the Equations of Motion in Dissipative Particle Dynamics Simulations

    Nikunen, P., Karttunen, M. & Vattulainen, I., 2003, In : Computer Physics Communications. 153, p. 407-423

    Research output: Contribution to journalArticleScientificpeer-review

  49. 2002
  50. Published

    Carbon nanotube structures: molecular dynamics simulation at realistic limit

    Huhtala, M., Kuronen, A. & Kaski, K., 2002, In : Computer Physics Communications. 146, 1, p. 30-37 PII S0010-4655(02)00432-0.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Computational studies of carbon nanotube structures

    Huhtala, M., Kuronen, A. & Kaski, K., 2002, In : Computer Physics Communications. 147 (1-2), p. 91-96

    Research output: Contribution to journalArticleScientificpeer-review

  52. 2001
  53. Published

    Computing microscopic structures of inhomogeneities in superconductors

    Virtanen, S. & Salomaa, M. M., 2001, In : Computer Physics Communications. 142, 1-3, p. 391-395

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Quantized circulation in dilute Bose-Einstein condensates

    Simula, T. P., Virtanen, S. M. M. & Salomaa, M. M., 2001, In : Computer Physics Communications. 142, 1-3, p. 396-400

    Research output: Contribution to journalArticleScientificpeer-review

  55. 2000
  56. Published

    An interactive simulation program for visualizing complex phenomena in solids

    Merimaa, J., Perondi, L. & Kaski, K., 2000, In : Computer Physics Communications. 124

    Research output: Contribution to journalArticleScientificpeer-review

  57. 1997
  58. Published

    Determination of thermometric parameters from the conductance curve of the normal metal based tunnel junction array

    Hirvi, K. P. & Pekola, J. P., 2 Oct 1997, In : Computer Physics Communications. 106, 1-2, p. 69-75 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  59. Published

    Choice of constants of motion coordinates in numerical solving of the three-dimensional Fokker-Planck equation for tokamaks

    Kiviniemi, T. & Heikkinen, J., 1997, In : Computer Physics Communications. 107, 1-3, p. 149-154

    Research output: Contribution to journalArticleScientificpeer-review

  60. 1993
  61. Published

    Monte Carlo simulation of runaway electrons in a toroidal geometry

    Heikkinen, J., Sipilä, S. & Pättikangas, T., 1993, In : Computer Physics Communications. 76, p. 215-230

    Research output: Contribution to journalArticleScientificpeer-review

ID: 211562