BMC BIOINFORMATICS

Research outputs

  1. 2018
  2. Published

    GPrank: An R package for detecting dynamic elements from genome-wide time series

    Topa, H. & Honkela, A. 4 Oct 2018 In : BMC Bioinformatics. 19, 1, p. 1-6 367

    Research output: Contribution to journalArticle

  3. 2017
  4. Published

    MediSyn: Uncertainty-aware Visualization of Multiple Biomedical Datasets to Support Drug Treatment Selection

    He, C., Micallef, L., Tanoli, Z-U-R., Kaski, S., Aittokallio, T. & Jacucci, G. 13 Sep 2017 In : BMC Bioinformatics. 18, p. 1-12 393

    Research output: Contribution to journalArticle

  5. 2016
  6. Published

    Selected proceedings of Machine Learning in Systems Biology: MLSB 2016

    van Dijk, A. D. J., Lähdesmäki, H., de Ridder, D. & Rousu, J. 13 Dec 2016 In : BMC BIOINFORMATICS. 17, Supplement 16, 2 p.

    Research output: Contribution to journalEditorial

  7. Published

    Selected proceedings of Machine Learning in Systems Biology: MLSB 2016

    van Dijk, A. D. J., Lähdesmäki, H., de Ridder, D. & Rousu, J. Dec 2016 In : BMC Bioinformatics. 17

    Research output: Contribution to journalSpecial issue

  8. 2015
  9. Published
  10. 2014
  11. Published

    Probabilistic drug connectivity mapping

    Parkkinen, J. A. & Kaski, S. 2014 In : BMC BIOINFORMATICS. 15, p. 000113

    Research output: Contribution to journalArticle

  12. Published

    Stronger findings from mass spectral data through multi-peak modeling

    Suvitaival, T., Rogers, S. & Kaski, S. 2014 In : BMC BIOINFORMATICS. 15, p. 208

    Research output: Contribution to journalArticle

  13. 2013
  14. Published
  15. 2012
  16. Published

    Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs

    Khan, S. A., Faisal, A., Mpindi, J. P., Parkkinen, J. A., Kalliokoski, T., Poso, A., Kallioniemi, O. P., Wennerberg, K. & Kaski, S. 2012 In : BMC BIOINFORMATICS. 13, 112, p. 1-14

    Research output: Contribution to journalArticle

  17. 2011
  18. Published

    Randomization techniques for assessing the significance of gene periodicity results

    Kallio, A., Vuokko, N., Ojala, M., Haiminen, N. & Mannila, H. 2011 In : BMC BIOINFORMATICS. 12, 330

    Research output: Contribution to journalArticle

  19. 2010
  20. Published

    Efficient Bayesian approach for multilocus association mapping including gene-gene interactions

    Marttinen, P. & Corander, J. 2010 In : BMC BIOINFORMATICS. 11, p. 443

    Research output: Contribution to journalArticle

  21. 2008
  22. Published

    Determining significance of pairwise co-occurrences of events in bursty sequences

    Haiminen, N., Mannila, H. & Terzi, E. 2008 In : BMC Bioinformatics. 9, 336

    Research output: Contribution to journalArticle

  23. Published

    Simple integrative preprocessing preserves what is shared in data sources

    Tripathi, A., Klami, A. & Kaski, S. 2008 In : BMC Bioinformatics. 9, p. 111

    Research output: Contribution to journalArticle

  24. 2007
  25. Published

    A novel Bayesian approach to quantify clinical variables and to determine their spectroscopic counterparts in 1H NMR metabonomic data

    Vehtari, A., Mäkinen, V-P., Soininen, P., Ingman, P., Mäkelä, S. M., Savolainen, M. J., Hannuksela, M. L., Kaski, K. & Ala-Korpela, M. 2007 In : BMC Bioinformatics. 8, Supplement 2, p. S8

    Research output: Contribution to journalArticle

  26. Published

    Comparing segmentations by applying randomization techniques

    Haiminen, N., Mannila, H. & Terzi, E. 2007 In : BMC Bioinformatics. 8, 171

    Research output: Contribution to journalArticle

  27. Published

    Constrained hidden Markov models for population-based haplotyping

    Landwehr, N., Mielikainen, T., Eronen, L., Toivonen, H. & Mannila, H. 2007 In : BMC BIOINFORMATICS. 8 (Suppl 2), p. S9/1-9

    Research output: Contribution to journalArticle

  28. Published

    Methods for estimating human endogenous retrovirus activities from EST databases

    Oja, M., Peltonen, J., Blomberg, J. & Kaski, S. 2007 In : BMC BIOINFORMATICS. 8 (Suppl2), p. S11/1-12

    Research output: Contribution to journalArticle

  29. Published

    Probabilistic modeling and machine learning in structural and systems biology

    Kaski, S., Rousu, J. & Ukkonen, E. 2007 In : BMC BIOINFORMATICS. 8 (Suppl2), p. S1/1-2

    Research output: Contribution to journalArticle

  30. 2003
  31. Published

    Trustworthiness and Metrics in Visualizing Similarity of Gene Expression

    Kaski, S., Nikkilä, J., Oja, M., Venna, J., Törrönen, P. & Castrén, E. 2003 In : BMC Bioinformatics. 4, 48

    Research output: Contribution to journalArticle

ID: 192528