Applied Microbiology & Biotechnology

Research outputs

  1. 2019
  2. Published

    A deletion in the STA1 promoter determines maltotriose and starch utilization in STA1+ Saccharomyces cerevisiae strains

    Krogerus, K., Magalhães, F., Kuivanen, J. & Gibson, B., 9 Jul 2019, In : Applied Microbiology and Biotechnology.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2018
  4. Published

    Analysis of the substrate specificity of α-L-arabinofuranosidases by DNA sequencer-aided fluorophore-assisted carbohydrate electrophoresis

    Maurício da Fonseca, M. J., Jurak, E., Kataja, K., Master, E. R., Berrin, J. G., Stals, I., Desmet, T., Van Landschoot, A. & Briers, Y., Dec 2018, In : Applied Microbiology and Biotechnology. 102, 23, p. 10091–10102

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    New concepts in anaerobic digestion processes: recent advances and biological aspects

    Castellano-Hinojosa, A., Armato, C., Pozo, C., González-Martínez, A. & González-López, J., 1 Jun 2018, In : Applied Microbiology and Biotechnology. 102, 12, p. 5065-5076 12 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  6. 2017
  7. Published

    High stability and low competitive inhibition of thermophilic Thermopolyspora flexuosa GH10 xylanase in biomass-dissolving ionic liquids

    Anbarasan, S., Wahlström, R., Hummel, M., Ojamo, H., Sixta, H. & Turunen, O., 1 Feb 2017, In : Applied Microbiology and Biotechnology. 101, 4, p. 1487-1498 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Novel brewing yeast hybrids: creation and application

    Krogerus, K., Magalhaes, F., Vidgren, V. & Gibson, B., Jan 2017, In : Applied Microbiology and Biotechnology. 101, 1, p. 65-78 14 p.

    Research output: Contribution to journalLiterature reviewScientificpeer-review

  9. Published

    16S rRNA gene-based characterization of bacteria potentially associated with phosphate and carbonate precipitation from a granular autotrophic nitrogen removal bioreactor

    Gonzalez-Martinez, A., Rodriguez-Sanchez, A., Rivadeneyra, M. A., Rivadeneyra, A., Martin-Ramos, D., Vahala, R. & Gonzalez-Lopez, J., 2017, In : Applied Microbiology and Biotechnology. 101, 2, p. 817-829 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Occurrence and function of enzymes for lignocellulose degradation in commercial Agaricus bisporus cultivation

    Kabel, M. A., Jurak, E., Mäkelä, M. R. & De Vries, R. P., 2017, In : Applied Microbiology and Biotechnology. 101, 11, p. 4363–4369 7 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  11. 2016
  12. Published

    A counterselection method for Lactococcus lactis genome editing based on class IIa bacteriocin sensitivity

    Wan, X., Usvalampi, A. M., Saris, P. E. J. & Takala, T. M., Nov 2016, In : Applied Microbiology and Biotechnology. 100, 22, p. 9661-9669 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Characterization and mutagenesis of two novel iron-sulphur cluster pentonate dehydratases

    Andberg, M., Aro-Kärkkäinen, N., Carlson, P., Oja, M., Bozonnet, S., Toivari, M., Hakulinen, N., O'Donohue, M., Penttilä, M. & Koivula, A., Sep 2016, In : Applied Microbiology and Biotechnology. 100, 17, p. 7549-7563 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Ploidy influences the functional attributes of de novo lager yeast hybrids

    Krogerus, K., Arvas, M., de Chiara, M., Magalhães, F., Mattinen, L., Oja, M., Vidgren, V., Yue, J. X., Liti, G. & Gibson, B., Aug 2016, In : Applied Microbiology and Biotechnology. 100, 16, p. 7203–7222 20 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Archaeal and bacterial community dynamics and bioprocess performance of a bench-scale two-stage anaerobic digester

    Gonzalez-Martinez, A., Garcia-Ruiz, M. J., Rodriguez-Sanchez, A., Osorio, F. & Gonzalez-Lopez, J., Jul 2016, In : Applied Microbiology and Biotechnology. 100, 13, p. 6013–6033 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Characterization of a unique Caulobacter crescentus aldose-aldose oxidoreductase having dual activities

    Andberg, M., Maaheimo, H., Kumpula, E-P., Boer, H., Toivari, M., Penttilä, M. & Koivula, A., Jan 2016, In : Applied Microbiology and Biotechnology. 100, 2, p. 673-685 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Xylose-induced dynamic effects on metabolism and gene expression in engineered Saccharomyces cerevisiae in anaerobic glucose-xylose cultures

    Alff-Tuomala, S., Salusjärvi, L., Barth, D., Oja, M., Penttilä, M., Pitkänen, J-P., Ruohonen, L. & Jouhten, P., Jan 2016, In : Applied Microbiology and Biotechnology. 100, 2, p. 969-985 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. 2015
  19. Published

    Two-step nitrification in a pure moving bed biofilm reactor-membrane bioreactor for wastewater treatment: nitrifying and denitrifying microbial populations and kinetic modeling

    Leyva-Díaz, J. C., González-Martínez, A., Muñío, M. M. & Poyatos, J. M., 1 Dec 2015, In : Applied Microbiology and Biotechnology. 99, 23, p. 10333-10343 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Analysis of antibody production in Saccharomyces cerevisiae: effects of ER protein quality control disruption

    de Ruijter, J. C. & Frey, A. D., Nov 2015, In : Applied Microbiology and Biotechnology. 99, 21, p. 9061-9071

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    A novel aldose-aldose oxidoreductase for co-production of D-xylonate and xylitol from D-xylose with Saccharomyces cerevisiae

    Wiebe, M. G., Nygård, Y., Oja, M., Andberg, M., Ruohonen, L., Koivula, A., Penttilä, M. & Toivari, M., Nov 2015, In : Applied Microbiology and Biotechnology. 99, 22, p. 9439-9447 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Which properties of cutinases are important for applications?

    Nyyssölä, A., 2015, In : Applied Microbiology and Biotechnology. 99, 12, p. 4931-4942

    Research output: Contribution to journalArticleScientificpeer-review

  23. 2014
  24. Published

    L-Arabinose/D-galactose 1-dehydrogenase of Rhizobium leguminosarum bv. trifolii characterised and applied for bioconversion of L-arabinose to L-arabonate with Saccharomyces cerevisiae

    Aro-Karkkainen, N., Toivari, M., Maaheimo, H., Ylilauri, M., Pentikainen, O. T., Andberg, M., Oja, M., Penttilä, M., Wiebe, M. G., Ruohonen, L. & 1 others, Koivula, A., Dec 2014, In : Applied Microbiology and Biotechnology. 98, 23, p. 9653-9665 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    The role of CRE1 in nucleosome positioning within the cbh1 promoter and coding regions of Trichoderma reesei

    Ries, L., Belshaw, N. J., Ilmen, M., Penttilä, M. E., Alapuranen, M. & Archer, D. B., Jan 2014, In : Applied Microbiology and Biotechnology. 98, 2, p. 749-762 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Cloning and characterization of a novel acidic cutinase from Sirococcus conigenus

    Nyyssölä, A., Pihlajaniemi, V., Häkkinen, M., Kontkanen, H., Saloheimo, M. & Nakari-Setälä, T., 2014, In : Applied Microbiology and Biotechnology. 98, 8, p. 3639-3650

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Engineering chimeric thermostable GH7 cellobiohydrolases in Saccharomyces cerevisiae

    Voutilainen, S. P., Nurmi-Rantala, S., Penttila, M. & Koivula, A., 2014, In : Applied Microbiology and Biotechnology. 98, 7, p. 2991-3001

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Enhanced stability of alcohol dehydrogenase by non-covalent interaction with polysaccharides

    Jadhav, S. B., Bankar, S. B., Granström, T., Ojamo, H., Singhal, R. S. & Survase, S. A., 2014, In : Applied Microbiology and Biotechnology. 98, 14, p. 6307-6316 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. 2013
  30. Published

    Discovery of novel secreted fungal sulfhydryl oxidases with a plate test screen

    Nivala, O., Mattinen, M. L., Faccio, G., Buchert, J. & Kruus, K., 1 Nov 2013, In : Applied Microbiology and Biotechnology. 97, 21, p. 9429-9437 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Influence of valine and other amino acids on total diacetyl and 2,3-pentanedione levels during fermentation of brewer's wort

    Krogerus, K. & Gibson, B. R., 2013, In : Applied Microbiology and Biotechnology. 97, 15, p. 6919-6930

    Research output: Contribution to journalArticleScientificpeer-review

  32. 2012
  33. Published

    Microbial D-xylonate production

    Toivari, M. H., Nygard, Y., Penttila, M., Ruohonen, L. & Wiebe, M. G., Oct 2012, In : Applied Microbiology and Biotechnology. 96, 1, p. 1-8 8 p.

    Research output: Contribution to journalLiterature reviewScientificpeer-review

  34. Published

    Asymmetric bioreduction of activated alkenes by a novel isolate of Achromobacter species producing enoate reductase

    Liu, Y. J., Pei, X. Q., Lin, H., Gai, P., Liu, Y. C. & Wu, Z. L., Aug 2012, In : Applied Microbiology and Biotechnology. 95, 3, p. 635-645 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Continuous bio-catalytic conversion of sugar mixture to acetone-butanol-ethanol by immobilized Clostridium acetobutylicum DSM 792

    Survase, S. A., van Heiningen, A. & Granstrom, T., 2012, In : Applied Microbiology and Biotechnology. 93, 6, p. 2309-2316

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    The effects of pH oscillication on Lactobacillus rhanmnosus batch cultivation

    Wallenius, J., Barth, D. & Eerikäinen, T., 2012, In : Applied Microbiology and Biotechnology. 95, 5, p. 1265-1273

    Research output: Contribution to journalArticleScientificpeer-review

  37. 2011
  38. Published

    Sulfhydryl oxidases: Sources, properties, production and applications

    Faccio, G., Nivala, O., Kruus, K., Buchert, J. & Saloheimo, M., 1 Aug 2011, In : Applied Microbiology and Biotechnology. 91, 4, p. 957-966 10 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  39. Published

    Production and characterisation of AoSOX2 from Aspergillus oryzae, a novel flavin-dependent sulfhydryl oxidase with good pH and temperature stability

    Faccio, G., Kruus, K., Buchert, J. & Saloheimo, M., 1 May 2011, In : Applied Microbiology and Biotechnology. 90, 3, p. 941-949 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published
  41. Published

    Continuous production of isopropanol and butanol using Clostridium beijerinckii DSM 6423

    Survase, S. A., Jurgens, G., van Heiningen, A. & Granström, T., 2011, In : Applied Microbiology and Biotechnology. 91, 5, p. 1305-1313

    Research output: Contribution to journalArticleScientificpeer-review

  42. 2010
  43. Published

    Saccharomyces cerevisiae engineered to produce D-xylonate

    Toivari, M. H., Ruohonen, L., Richard, P., Penttila, M. & Wiebe, M. G., Oct 2010, In : Applied Microbiology and Biotechnology. 88, 3, p. 751-760 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Expression of Trichoderma reesei cellulases CBHI and EGI in Ashbya gossypii

    Ribeiro, O., Wiebe, M., Ilmen, M., Domingues, L. & Penttila, M., Jul 2010, In : Applied Microbiology and Biotechnology. 87, 4, p. 1437-1446 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Identification in Agrobacterium tumefaciens of the d-galacturonic acid dehydrogenase gene

    Boer, H., Maaheimo, H., Koivula, A., Penttila, M. & Richard, P., Apr 2010, In : Applied Microbiology and Biotechnology. 86, 3, p. 901-909 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Discovery of a new tyrosinase-like enzyme family lacking a C-terminally processed domain: Production and characterization of an Aspergillus oryzae catechol oxidase

    Gasparetti, C., Faccio, G., Arvas, M., Buchert, J., Saloheimo, M. & Kruus, K., 1 Mar 2010, In : Applied Microbiology and Biotechnology. 86, 1, p. 213-226 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Enhancing the flux of D-glucose to the pentose phosphate pathway in Saccharomyces cerevisiae for the production of D-ribose and ribitol

    Toivari, M. H., Maaheimo, H., Penttila, M. & Ruohonen, L., Jan 2010, In : Applied Microbiology and Biotechnology. 85, 3, p. 731-739 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. 2009
  49. Published

    Biotechnological production of L-ribose from L-arabinose

    Helanto, M., Kiviharju, K., Granstrom, T., Leisola, M. & Nyyssölä, A., 2009, In : Applied Microbiology and Biotechnology. 83, 1, p. 77-83

    Research output: Contribution to journalArticleScientificpeer-review

  50. 2008
  51. Published

    A new and efficient phosphate starvation inducible expression system for Lactococcus lactis

    Siren, N., Salonen, K., Leisola, M. & Nyyssola, A., 2008, In : Applied Microbiology and Biotechnology. 79, 5, p. 803-810

    Research output: Contribution to journalArticleScientificpeer-review

  52. 2007
  53. Published

    A chemostat study of Streptomyces peucetius var. caesius N47

    Kiviharju, K., Moilanen, U., Leisola, M. & Eerikäinen, T., 2007, In : Applied Microbiology and Biotechnology. p. 1267-1274

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    A rare sugar xylitol.Part II: biotechnological production and future applications of xylitol (Review)

    Leisola, M., Granström, T. & Izumori, K., 2007, In : Applied Microbiology and Biotechnology. 74, p. 273-276

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    A rare sugar xylitol.Part I: the biochemistry and biosynthesis of xylitol

    Leisola, M., Granström, T. & Izumori, K., 2007, In : Applied Microbiology and Biotechnology. 74, 2, p. 277-281

    Research output: Contribution to journalArticleScientificpeer-review

  56. Published

    Protein engineering; opportunities and challenges

    Leisola, M. & Turunen, O., 2007, In : Applied Microbiology and Biotechnology.

    Research output: Contribution to journalArticleScientificpeer-review

  57. 2004
  58. Published

    Growth charachteristics and oxidative capacity of Acetobacter aceti IFO 3281: implications for L-ribulose production

    Kylmä, A. K., Granström, T. & Leisola, M., 2004, In : Applied Microbiology and Biotechnology. 63, p. 584-591

    Research output: Contribution to journalArticleScientificpeer-review

  59. Published

    Improved xylanase production by Trichoderma reesei grown on L-arabinose and lactose or D-glucose mixtures

    Xiong, H., Turunen, O., Pastinen, O., Leisola, M. & von Weymarn, N., 2004, In : Applied Microbiology and Biotechnology. 64, p. 353-358

    Research output: Contribution to journalArticleScientificpeer-review

  60. 2002
  61. Published

    Purification and characterisation of a novel laccase from the ascomycete Melanocarpus albomyces

    Kiiskinen, L. L., Viikari, L. & Kruus, K., 22 Jul 2002, In : Applied Microbiology and Biotechnology. 59, 2-3, p. 198-204 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  62. Published

    Process technological effects of deletion and amplification of hydrophobins I and II in transformants of Trichoderma reesei

    Bailey, M. J., Askolin, S., Hörhammer, N., Tenkanen, M., Linder, M., Penttilä, M. & Nakari-Setälä, T., May 2002, In : Applied Microbiology and Biotechnology. 58, 6, p. 721-727 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  63. Published

    Cell-adhered conjugated linoleic acid regulates isomerization of linoleic acid by resting cells of Propionibacterium freudenreichii

    Rainio, A., Vahvaselkä, M. & Laakso, S., 2002, In : Applied Microbiology and Biotechnology. 60, 4, p. 481-484

    Research output: Contribution to journalArticleScientificpeer-review

  64. Published

    Controlled transient changes reveal differences in metabolite production in two Candida yeasts

    Granström, T. & Leisola, M., 2002, In : Applied Microbiology and Biotechnology. 58, p. 511-516

    Research output: Contribution to journalArticleScientificpeer-review

  65. Published

    Hydrolysis of steryl esters by a lipase (lip 3) from Candida rugosa

    Tenkanen, M., Kontkanen, H., Isoniemi, R., Septz, P. & Holmbom, B., 2002, In : Applied Microbiology and Biotechnology. 60, p. 120-127

    Research output: Contribution to journalArticleScientificpeer-review

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