Science-IT

Facility/Equipment: Facility

Research outputs

  1. 2017
  2. Published

    Nudged elastic band calculations accelerated with Gaussian process regression

    Koistinen, O-P., Dagbjartsdóttir, F. B., Ásgeirsson, V., Vehtari, A. & Jonsson, H., 21 Oct 2017, In : Journal of Chemical Physics. 147, 15, p. 1-14 152720.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Large Cuts with Local Algorithms on Triangle-Free Graphs

    Hirvonen, J., Rybicki, J., Schmid, S. & Suomela, J., 20 Oct 2017, In : The Electronic Journal of Combinatorics. 24, 4, p. 1-20 20 p., P4.21.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Bloch-line dynamics within moving domain walls in 3D ferromagnets

    Herranen, T. & Laurson, L., 18 Oct 2017, In : Physical Review B. 96, 14, 144422.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Kohn-Sham Decomposition in Real-Time Time-Dependent Density-Functional Theory: An Efficient Tool for Analyzing Plasmonic Excitations

    Rossi, T. P., Kuisma, M., Puska, M. J., Nieminen, R. M. & Erhart, P., 10 Oct 2017, In : Journal of Chemical Theory and Computation. 13, 10, p. 4779-4790 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Effect of edge plasmons on the optical properties of MoS2 monolayer flakes

    Rossi, T. P., Winther, K. T., Jacobsen, K. W., Nieminen, R. M., Puska, M. J. & Thygesen, K. S., 5 Oct 2017, In : Physical Review B. 96, 15, 10 p., 155407.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Hardware Model Checking Competition 2017

    Biere, A., van Dijk, T. & Heljanko, K., 2 Oct 2017, Proceedings of 2017 Formal Methods in Computer Aided Design, FMCAD 2017. Stewart, D. & Weissenbacher, G. (eds.). IEEE, p. 9 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

  8. Published

    Formation of Zn- and O- vacancy clusters in ZnO through deuterium annealing

    Johansen, K. M., Tuomisto, F., Makkonen, I. & Vines, L., Oct 2017, In : MATERIALS SCIENCE IN SEMICONDUCTOR PROCESSING. 69, p. 23-27 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Friction controls even submerged granular flows

    Koivisto, J., Korhonen, M., Alava, M., Ortiz, C. P., Durian, D. J. & Puisto, A., 15 Sep 2017, In : Soft Matter. 13, 41, p. 7657-7664

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Synthetic neutron camera and spectrometer in JET based on AFSI-ASCOT simulations

    Sirén, P., Varje, J., Weisen, H., Koskela, T. & Contributors, J. E. T., 8 Sep 2017, In : Journal of Instrumentation. 12, 9, C09010.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Extending hybrid word-character neural machine translation with multi-task learning of morphological analysis

    Grönroos, S-A., Virpioja, S. & Kurimo, M., 7 Sep 2017, Second Conference on Machine Translation (WMT17); Copenhagen, Denmark. p. 296–302 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  12. Published

    Bimodal Grain-Size Scaling of Thermal Transport in Polycrystalline Graphene from Large-Scale Molecular Dynamics Simulations

    Fan, Z., Hirvonen, P., Pereira, L. F. C., Ervasti, M., Elder, K. R., Donadio, D., Harju, A. & Ala-Nissilä, T., 6 Sep 2017, In : Nano Letters. 17, 10, p. 5919−5924 6 p.

    Research output: Contribution to journalLetterScientificpeer-review

  13. Published

    Substitutional carbon doping of free-standing and Ru-supported BN sheets: A first-principles study

    Berseneva, N., Komsa, H. P., Vierimaa, V., Björkman, T., Fan, Z., Harju, A., Todorović, M., Krasheninnikov, A. V. & Nieminen, R. M., 4 Sep 2017, In : Journal of Physics Condensed Matter. 29, 41, p. 1-8 415301.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC

    Vehtari, A., Gelman, A. & Gabry, J., Sep 2017, In : STATISTICS AND COMPUTING. 27, 5, p. 1413–1432

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Predictive processing increases intelligibility of acoustically distorted speech: Behavioral and neural correlates

    Hakonen, M., May, P. J. C., Jääskeläinen, I., Jokinen, E., Sams, M. & Tiitinen, H., Sep 2017, In : Brain and Behavior. 7, 9, 15 p., e00789.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Fixation Prediction in Videos using Unsupervised Hierarchical Features

    Wang, J., Rezazadegan Tavakoli, H. & Laaksonen, J., 22 Aug 2017, Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2017. IEEE, p. 2225-2232 8 p. 8015010. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition workshops).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  17. Published

    Fast vortex wall motion in wide permalloy strips from double switching of the vortex core

    Estevez Nuno, V. & Laurson, L., 16 Aug 2017, In : Physical Review B. 96, 6, p. 1-11 064420.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Distributed neural signatures of natural audiovisual speech and music in the human auditory cortex

    Salmi, J., Koistinen, O-P., Glerean, E., Jylänki, P., Vehtari, A., Jääskeläinen, I., Mäkelä, S., Nummenmaa, L., Nummi-Kuisma, K., Nummi, I. & 1 othersSams, M., 15 Aug 2017, In : NeuroImage. 157, p. 108-117 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Inferring the strength of social ties: A community-driven approach

    Rozenshtein, P., Tatti, N. & Gionis, A., 13 Aug 2017, KDD 2017 - Proceedings of the 23rd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Vol. Part F129685. p. 1017-1025 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  20. Published

    The impact on global magnetohydrodynamic simulations from varying initialisation methods: Results from GUMICS-4

    Lakka, A., Pulkkinen, T. I., DImmock, A. P., Osmane, A., Honkonen, I., Palmroth, M. & Janhunen, P., 1 Aug 2017, In : Annales Geophysicae. 35, 4, p. 907-922 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Automatic Construction of the Finnish Parliament Speech Corpus

    Mansikkaniemi, A., Smit, P. & Kurimo, M., Aug 2017, Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. International Speech Communication Association, Vol. 2017-August. p. 3762-3766 (Interspeech: Annual Conference of the International Speech Communication Association).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  22. Published

    Improved subword modeling for WFST-based speech recognition

    Smit, P., Virpioja, S. & Kurimo, M., Aug 2017, Proceedings of Interspeech 2017. International Speech Communication Association, p. 2551-2555 5 p. (Interspeech: Annual Conference of the International Speech Communication Association).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  23. Published

    Reading validation for pronunciation evaluation in the Digitala project

    Rouhe, A., Karhila, R., Smit, P. & Kurimo, M., Aug 2017, Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. International Speech Communication Association, Vol. 2017-August. p. 2050-2051 2 p. (Interspeech: Annual Conference of the International Speech Communication Association).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Published

    SIAK — A Game for Foreign Language Pronunciation Learning

    Karhila, R., Ylinen, S., Enarvi, S., Palomäki, K., Nikulin, A., Rantula, O., Viitanen, V., Dhinakaran, K., Smolander, A-R., Kallio, H. & 4 othersJunttila, K., Uther, M., Hämäläinen, P. & Kurimo, M., Aug 2017, Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. International Speech Communication Association, Vol. 2017-August. p. 3429-3430 (Interspeech: Annual Conference of the International Speech Communication Association).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  25. Published

    Finite state models for recognition and validation of read prompts

    Rouhe, A., 31 Jul 2017, AALTO-YLIOPISTO. 83 p.

    Research output: ThesisMaster's thesisTheses

  26. Published

    Effect of Alkali Metal Atom Doping on the CuInSe2-Based Solar Cell Absorber

    Malitckaya, M., Komsa, H. P., Havu, V. & Puska, M. J., 27 Jul 2017, In : Journal of Physical Chemistry C. 121, 29, p. 15516-15528 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Efficient statistical methods for detecting differential methylation

    Halla-aho, V. & Lähdesmäki, H., 22 Jul 2017.

    Research output: Contribution to conferencePaperScientific

  28. Published

    Knowledge elicitation via sequential probabilistic inference for high-dimensional prediction

    Daee, P., Peltola, T., Soare, M. & Kaski, S., 12 Jul 2017, In : Machine Learning. 106, 9, p. 1599-1620 22 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Interactive Prior Elicitation of Feature Similarities for Small Sample Size Prediction

    Afrabandpey, H., Peltola, T. & Kaski, S., 10 Jul 2017, Proceedings of the 25th Conference on User Modeling, Adaptation and Personalization . Bratislava, Slovakia, p. 265-269 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  30. Published

    Structural Transformations in Two-Dimensional Transition-Metal Dichalcogenide MoS2 under an Electron Beam: Insights from First-Principles Calculations

    Kretschmer, S., Komsa, H. P., Bøggild, P. & Krasheninnikov, A. V., 6 Jul 2017, In : Journal of Physical Chemistry Letters. 8, 13, p. 3061-3067 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Hole density and acceptor-type defects in MBE-grown GaSb1-x Bix

    Segercrantz, N., Slotte, J., Makkonen, I., Tuomisto, F., Sandall, I. C., Ashwin, M. J. & Veal, T. D., 3 Jul 2017, In : Journal of Physics D: Applied Physics. 50, 29, p. 1-6 6 p., 295102.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Speciation trajectories in recombining bacterial species

    Marttinen, P. & Hanage, W. P., 3 Jul 2017, In : PLoS computational biology. 13, 7, p. 1-15 15 p., e1005640.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Neural mechanisms for integrating consecutive and interleaved natural events

    Lahnakoski, J., Jääskeläinen, I., Sams, M. & Nummenmaa, L., Jul 2017, In : Human Brain Mapping. 38, 7, p. 3360–3376

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Image pseudo tag generation with Deep Boltzmann machine anc topic-concept similarity map

    Ishikawa, S., Laaksonen, J. & Karhunen, J., 30 Jun 2017, 2017 International Joint Conference on Neural Networks, IJCNN 2017 - Proceedings. Institute of Electrical and Electronics Engineers, p. 1305-1312 8 p. 7966003

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  35. Published

    Understanding quantitative determinants of film mood in different types of scenes

    Tarvainen, J., Laaksonen, J. & Takala, T., 13 Jun 2017.

    Research output: Contribution to conferenceAbstractScientificpeer-review

  36. Published

    Data Collection for Mental Health Studies Through Digital Platforms: Requirements and Design of a Prototype

    Aledavood, T., Triana Hoyos, A., Alakörkkö, T., Kaski, K., Saramäki, J., Isometsä, E. & Darst, R., 9 Jun 2017, In : JMIR Research Protocols. 6, 6, 11 p., e110.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Impurity and soliton dynamics in a Fermi gas with nearest-neighbor interactions

    Visuri, A. M., Törmä, P. & Giamarchi, T., 7 Jun 2017, In : Physical Review A. 95, 6, p. 1-12 063605.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    TEX-Nets: Binary patterns encoded convolutional neural networks for texture recognition

    Anwer, R. M., Khan, F. S., van de Weijer, J. & Laaksonen, J., 6 Jun 2017, ICMR 2017 - Proceedings of the 2017 ACM International Conference on Multimedia Retrieval. p. 125-132 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  39. Published

    VisualLabel: An Integrated Multimedia Content Management and Access Framework

    Ahmad, I., Rantanen, P., Sillberg, P., Laaksonen, J., Liu, S., Forss, T., Malik, A., Nieminen, M., Shetty, R., Ishikawa, S. & 4 othersKallio, J., Saarinen, J. P., Gabbouj, M. & Soini, J., 5 Jun 2017, The Proceedings of the 27th International Conference on Information Modelling and Knowledge Bases, EJC 2017. Sornlertlamvanich, V., Chawakitchareon, P., Hansuebsai, A., Koopipat, C., Kiyoki, Y., Kangassalo, H., Thalheim, B. & Yoshida, N. (eds.). Thailand, p. 332-353 22 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  40. Published

    Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila

    David, S., Sánchez-Busó, L., Harris, S. R., Marttinen, P., Rusniok, C., Buchrieser, C., Harrison, T. G. & Parkhill, J., 1 Jun 2017, In : PLoS Genetics. 13, 6, p. 1-21 e1006855.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    First-Principles Modeling of Point Defects and Complexes in Thin-Film Solar-Cell Absorber CuInSe2

    Malitckaya, M., Komsa, H. P., Havu, V. & Puska, M. J., 1 Jun 2017, In : Advanced Electronic Materials. 3, 6, p. 1-9 1600353.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Hybrid LES/RANS with wall treatment in tangential and impinging flow configurations

    Keskinen, K., Nuutinen, M., Kaario, O., Vuorinen, V., Koch, J., Wright, Y. M., Larmi, M. & Boulouchos, K., 1 Jun 2017, In : International Journal of Heat and Fluid Flow. 65, p. 141-158 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Proportion of effects by head-related transfer function and receiver position variation to interaural cross-correlation values

    Pätynen, J., 1 Jun 2017, In : Journal of the Acoustical Society of America. 141, 6, p. EL579-EL584

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Uniform description of polymer ejection dynamics from capsid with and without hydrodynamics

    Piili, J., Suhonen, P. M. & Linna, R. P., 26 May 2017, In : Physical Review E. 95, 5, p. 1-12 12 p., 052418.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Charge-Transfer-Driven Nonplanar Adsorption of F4TCNQ Molecules on Epitaxial Graphene

    Kumar, A., Banerjee, K., Dvorak, M., Schulz, F., Harju, A., Rinke, P. & Liljeroth, P., 23 May 2017, In : ACS Nano. 11, 5, p. 4960-4968 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Experimental Realization of a Dirac Monopole through the Decay of an Isolated Monopole

    Ollikainen, T., Tiurev, K., Blinova, A., Lee, W., Hall, D. S. & Möttönen, M., 17 May 2017, In : Physical Review X. 7, 2, p. 1-10 021023.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Inferring Cognitive Models from Data using Approximate Bayesian Computation

    Kangasrääsiö, A., Athukorala, K., Howes, A., Corander, J., Kaski, S. & Oulasvirta, A., 9 May 2017, Proceedings of the 2017 CHI Conference on Human Factors in Computing Systems. ACM, p. 1295-1306 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  48. Published

    Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations

    Mostowy, R., Croucher, N. J., Andam, C. P., Corander, J., Hanage, W. P. & Marttinen, P., 1 May 2017, In : MOLECULAR BIOLOGY AND EVOLUTION. 34, 5, p. 1167-1182 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Portability Analysis for Axiomatic Memory Models. PORTHOS: One Tool for all Models

    Ponce-de-León, H., Furbach, F., Heljanko, K. & Meyer, R., 28 Apr 2017. 38 p.

    Research output: Contribution to conferencePaperScientific

  50. Published

    Irreversibility transition of colloidal polycrystals under cyclic deformation

    Jana, P. K., Alava, M. J. & Zapperi, S., 30 Mar 2017, In : Scientific Reports. 7, p. 1-8 45550.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Critical Assessment of Small Molecule Identification 2016: automated methods

    Schymanski, E. L., Ruttkies, C., Krauss, M., Brouard, C., Kind, T., Dührkop, K., Allen, F., Vaniya, A., Verdegem, D., Böcker, S. & 7 othersRousu, J., Shen, H., Tsugawa, H., Sajed, T., Fiehn, O., Ghesquière, B. & Neumann, S., 27 Mar 2017, In : JOURNAL OF CHEMINFORMATICS. 9, 1, 22.

    Research output: Contribution to journalArticleScientificpeer-review

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