Science-IT

Facility/Equipment: Facility

Research outputs

  1. 2018
  2. Published

    ViraPipe: Scalable Parallel Pipeline for Viral Metagenome Analysis from Next Generation Sequencing Reads

    Maarala, A., Bzhalava, Z., Dillner, J., Heljanko, K. & Bzhalava, D., 2018, In : Bioinformatics. 34, 6, p. 928-935 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2017
  4. Published

    Excitation Spectra in Crystal Plasticity

    Ovaska, M., Lehtinen, A., Alava, M. J., Laurson, L. & Zapperi, S., 27 Dec 2017, In : Physical Review Letters. 119, 26, p. 1-5 265501.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Tsu-Esaki modeling of tunneling currents in ferroelectric tunnel junctions

    Tuomisto, N., Van Dijken, S. & Puska, M., 21 Dec 2017, In : Journal of Applied Physics. 122, 23, p. 1-14 234301.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Brain-to-brain hyperclassification reveals action-specific motor mapping of observed actions in humans

    Smirnov, D., Lachat, F., Peltola, T., Lahnakoski, J., Koistinen, O-P., Glerean, E., Vehtari, A., Hari, R., Sams, M. & Nummenmaa, L., 11 Dec 2017, In : PloS one. 12, 12, e0189508.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Inference of Strategic Behavior based on Incomplete Observation Data

    Kangasrääsiö, A. & Kaski, S., 8 Dec 2017, NIPS17 Workshop: Learning in the Presence of Strategic Behavior. Carnegie Mellon University, 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionProfessional

  8. Published

    Quantum knots in Bose-Einstein condensates created by counterdiabatic control

    Ollikainen, T., Masuda, S., Möttönen, M. & Nakahara, M., 7 Dec 2017, In : Physical Review A. 96, 6, p. 1-7 063609.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Vibrational Properties of Metal Phosphorus Trichalcogenides from First-Principles Calculations

    Hashemi, A., Komsa, H. P., Puska, M. & Krasheninnikov, A. V., 7 Dec 2017, In : Journal of Physical Chemistry C. 121, 48, p. 27207-27217 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Quantification of tension to explain bias dependence of driven polymer translocation dynamics

    Suhonen, P. M., Piili, J. & Linna, R. P., 6 Dec 2017, In : Physical Review E. 96, 6, p. 1-15 062401.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Evaluation of the concentration of point defects in GaN

    Reshchikov, M. A., Usikov, A., Helava, H., Makarov, Y. N., Prozheeva, V., Makkonen, I., Tuomisto, F., Leach, J. H. & Udwary, K., 1 Dec 2017, In : Scientific Reports. 7, 1, p. 1-11 9297.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Modelling community formation driven by the status of individual in a society

    Snellman, J., Iniguez Gonzalez, G., Govezensky, T., Barrio, R. A. & Kaski, K., 1 Dec 2017, In : Journal of Complex Networks. 5, 6, p. 817-838 22 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Nanoscale control of competing interactions and geometrical frustration in a dipolar trident lattice

    Farhan, A., Petersen, C. F., Dhuey, S., Anghinolfi, L., Qin, Q. H., Saccone, M., Velten, S., Wuth, C., Gliga, S., Mellado, P. & 3 othersAlava, M. J., Scholl, A. & Van Dijken, S., 1 Dec 2017, In : Nature Communications. 8, 1, p. 1-7 1238.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Computational and perceptual determinants of film mood in different types of scenes

    Tarvainen, J., Laaksonen, J. & Takala, T., Dec 2017, Proceedings - 2017 IEEE International Symposium on Multimedia, ISM 2017. IEEE, p. 185-192

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  15. Published

    Efficient acquisition rules for model-based approximate Bayesian computation

    Järvenpää, M., Gutmann, M., Pleska, A., Vehtari, A. & Marttinen, P., Dec 2017

    Research output: Other contributionScientificpeer-review

  16. Published
  17. Published

    Modeling under-resourced languages for speech recognition

    Kurimo, M., Enarvi, S., Tilk, O., Varjokallio, M., Mansikkaniemi, A. & Alumäe, T., Dec 2017, In : LANGUAGE RESOURCES AND EVALUATION. 51, 4, p. 961-987 27 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Highly conductive and transparent single-walled carbon nanotube thin films from ethanol by floating catalyst chemical vapor deposition

    Ding, E. X., Jiang, H., Zhang, Q., Tian, Y., Laiho, P., Hussain, A., Liao, Y., Wei, N. & Kauppinen, E. I., 28 Nov 2017, In : Nanoscale. 9, 44, p. 17601-17609 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Synthetic NPA diagnostic for energetic particles in JET plasmas

    Varje, J., Sirén, P., Weisen, H., Kurki-Suonio, T., Äkäslompolo, S. & Contributors, J. E. T., 22 Nov 2017, In : Journal of Instrumentation. 12, 11, p. 1-6 C11025.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Amphoteric Be in GaN: Experimental Evidence for Switching between Substitutional and Interstitial Lattice Sites

    Tuomisto, F., Prozheeva, V., Makkonen, I., Myers, T. H., Bockowski, M. & Teisseyre, H., 9 Nov 2017, In : Physical Review Letters. 119, 19, p. 1-5 196404.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Magnitude-Preserving Ranking for Structured Outputs

    Brouard, C., Bach, E., Böcker, S. & Rousu, J., 3 Nov 2017, Proceedings of the Ninth Asian Conference on Machine Learning. Zhang, M-L. & Noh, Y-K. (eds.). p. 407-422 16 p. (Proceedings of Machine Learning Research; vol. 77).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  22. Published

    Positron annihilation analysis of the atomic scale changes in oxidized Zircaloy-4 samples

    Heikinheimo, J., Ortner, S., Makkonen, I., Kujala, J., Blackmur, M. & Tuomisto, F., 1 Nov 2017, In : Journal of Nuclear Materials. 495, p. 172-180 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Rigidity-induced scale invariance in polymer ejection from capsid

    Linna, R. P., Suhonen, P. M. & Piili, J., 1 Nov 2017, In : Physical Review E. 96, 5, p. 1-10 052402.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Testing Programs with Contextual Unfoldings

    Kähkönen, K. & Heljanko, K., 1 Nov 2017, In : ACM Transactions on Embedded Computing Systems. 17, 1, p. 1-25 23.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    A Mutually-Dependent Hadamard Kernel for Modelling Latent Variable Couplings

    Remes, S., Heinonen, M. & Kaski, S., Nov 2017, Proceedings of the 9th Asian Conference on Machine Learning. Zhang, M-L. & Noh, Y-K. (eds.). p. 455-470 16 p. (Proceedings of Machine Learning Research; vol. 77).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Published

    Automatic Speech Recognition with Very Large Conversational Finnish and Estonian Vocabularies

    Enarvi, S., Smit, P., Virpioja, S. & Kurimo, M., Nov 2017, In : IEEE/ACM Transactions on Audio, Speech, and Language Processing. 25, 11, p. 2085-2097 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Janićević et al. Reply

    Janićević, S., Laurson, L., Måløy, K. J., Santucci, S. & Alava, M. J., 31 Oct 2017, In : Physical Review Letters. 119, 18, p. 1-2 188901.

    Research output: Contribution to journalComment/debateScientific

  28. Published

    Oblivious Neural Network Predictions via MiniONN Transformations

    Liu, J., Juuti, M., Lu, Y. & Asokan, N., 30 Oct 2017, Proceedings of the 2017 ACM SIGSAC Conference on Computer and Communications Security . ACM, p. 619-631

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  29. Published

    Nudged elastic band calculations accelerated with Gaussian process regression

    Koistinen, O-P., Dagbjartsdóttir, F. B., Ásgeirsson, V., Vehtari, A. & Jonsson, H., 21 Oct 2017, In : Journal of Chemical Physics. 147, 15, p. 1-14 152720.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Large Cuts with Local Algorithms on Triangle-Free Graphs

    Hirvonen, J., Rybicki, J., Schmid, S. & Suomela, J., 20 Oct 2017, In : The Electronic Journal of Combinatorics. 24, 4, p. 1-20 20 p., P4.21.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Bloch-line dynamics within moving domain walls in 3D ferromagnets

    Herranen, T. & Laurson, L., 18 Oct 2017, In : Physical Review B. 96, 14, 144422.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Kohn-Sham Decomposition in Real-Time Time-Dependent Density-Functional Theory: An Efficient Tool for Analyzing Plasmonic Excitations

    Rossi, T. P., Kuisma, M., Puska, M. J., Nieminen, R. M. & Erhart, P., 10 Oct 2017, In : Journal of Chemical Theory and Computation. 13, 10, p. 4779-4790 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Effect of edge plasmons on the optical properties of MoS2 monolayer flakes

    Rossi, T. P., Winther, K. T., Jacobsen, K. W., Nieminen, R. M., Puska, M. J. & Thygesen, K. S., 5 Oct 2017, In : Physical Review B. 96, 15, 10 p., 155407.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Hardware Model Checking Competition 2017

    Biere, A., van Dijk, T. & Heljanko, K., 2 Oct 2017, Proceedings of 2017 Formal Methods in Computer Aided Design, FMCAD 2017. Stewart, D. & Weissenbacher, G. (eds.). IEEE, p. 9 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientific

  35. Published

    Formation of Zn- and O- vacancy clusters in ZnO through deuterium annealing

    Johansen, K. M., Tuomisto, F., Makkonen, I. & Vines, L., Oct 2017, In : MATERIALS SCIENCE IN SEMICONDUCTOR PROCESSING. 69, p. 23-27 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Friction controls even submerged granular flows

    Koivisto, J., Korhonen, M., Alava, M., Ortiz, C. P., Durian, D. J. & Puisto, A., 15 Sep 2017, In : Soft Matter. 13, 41, p. 7657-7664

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Synthetic neutron camera and spectrometer in JET based on AFSI-ASCOT simulations

    Sirén, P., Varje, J., Weisen, H., Koskela, T. & Contributors, J. E. T., 8 Sep 2017, In : Journal of Instrumentation. 12, 9, C09010.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Extending hybrid word-character neural machine translation with multi-task learning of morphological analysis

    Grönroos, S-A., Virpioja, S. & Kurimo, M., 7 Sep 2017, Second Conference on Machine Translation (WMT17); Copenhagen, Denmark. p. 296–302 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  39. Published

    Substitutional carbon doping of free-standing and Ru-supported BN sheets: A first-principles study

    Berseneva, N., Komsa, H. P., Vierimaa, V., Björkman, T., Fan, Z., Harju, A., Todorović, M., Krasheninnikov, A. V. & Nieminen, R. M., 4 Sep 2017, In : Journal of Physics Condensed Matter. 29, 41, p. 1-8 415301.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC

    Vehtari, A., Gelman, A. & Gabry, J., Sep 2017, In : STATISTICS AND COMPUTING. 27, 5, p. 1413–1432

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Predictive processing increases intelligibility of acoustically distorted speech: Behavioral and neural correlates

    Hakonen, M., May, P. J. C., Jääskeläinen, I., Jokinen, E., Sams, M. & Tiitinen, H., Sep 2017, In : Brain and Behavior. 7, 9, 15 p., e00789.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Fixation Prediction in Videos using Unsupervised Hierarchical Features

    Wang, J., Rezazadegan Tavakoli, H. & Laaksonen, J., 22 Aug 2017, Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2017. IEEE, p. 2225-2232 8 p. 8015010. (IEEE Computer Society Conference on Computer Vision and Pattern Recognition workshops).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  43. Published

    Fast vortex wall motion in wide permalloy strips from double switching of the vortex core

    Estevez Nuno, V. & Laurson, L., 16 Aug 2017, In : Physical Review B. 96, 6, p. 1-11 064420.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Distributed neural signatures of natural audiovisual speech and music in the human auditory cortex

    Salmi, J., Koistinen, O-P., Glerean, E., Jylänki, P., Vehtari, A., Jääskeläinen, I., Mäkelä, S., Nummenmaa, L., Nummi-Kuisma, K., Nummi, I. & 1 othersSams, M., 15 Aug 2017, In : NeuroImage. 157, p. 108-117 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    The impact on global magnetohydrodynamic simulations from varying initialisation methods: Results from GUMICS-4

    Lakka, A., Pulkkinen, T. I., DImmock, A. P., Osmane, A., Honkonen, I., Palmroth, M. & Janhunen, P., 1 Aug 2017, In : Annales Geophysicae. 35, 4, p. 907-922 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Automatic Construction of the Finnish Parliament Speech Corpus

    Mansikkaniemi, A., Smit, P. & Kurimo, M., Aug 2017, Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. International Speech Communication Association, Vol. 2017-August. p. 3762-3766 (Interspeech: Annual Conference of the International Speech Communication Association).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  47. Published

    Improved subword modeling for WFST-based speech recognition

    Smit, P., Virpioja, S. & Kurimo, M., Aug 2017, Proceedings of Interspeech 2017. International Speech Communication Association, p. 2551-2555 5 p. (Interspeech: Annual Conference of the International Speech Communication Association).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  48. Published

    Reading validation for pronunciation evaluation in the Digitala project

    Rouhe, A., Karhila, R., Smit, P. & Kurimo, M., Aug 2017, Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. International Speech Communication Association, Vol. 2017-August. p. 2050-2051 2 p. (Interspeech: Annual Conference of the International Speech Communication Association).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  49. Published

    SIAK — A Game for Foreign Language Pronunciation Learning

    Karhila, R., Ylinen, S., Enarvi, S., Palomäki, K., Nikulin, A., Rantula, O., Viitanen, V., Dhinakaran, K., Smolander, A-R., Kallio, H. & 4 othersJunttila, K., Uther, M., Hämäläinen, P. & Kurimo, M., Aug 2017, Proceedings of the Annual Conference of the International Speech Communication Association, INTERSPEECH. International Speech Communication Association, Vol. 2017-August. p. 3429-3430 (Interspeech: Annual Conference of the International Speech Communication Association).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  50. Published

    Finite state models for recognition and validation of read prompts

    Rouhe, A., 31 Jul 2017, AALTO-YLIOPISTO. 83 p.

    Research output: ThesisMaster's thesisTheses

  51. Published

    Effect of Alkali Metal Atom Doping on the CuInSe2-Based Solar Cell Absorber

    Malitckaya, M., Komsa, H. P., Havu, V. & Puska, M. J., 27 Jul 2017, In : Journal of Physical Chemistry C. 121, 29, p. 15516-15528 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  52. Published

    Efficient statistical methods for detecting differential methylation

    Halla-aho, V. & Lähdesmäki, H., 22 Jul 2017.

    Research output: Contribution to conferencePaperScientific

ID: 1594802